AMCG00012856 (lsm8,LOC107592220,LOC107580766,LOC107656302)


Basic Information

Item Value
gene id AMCG00012856
gene name lsm8,LOC107592220,LOC107580766,LOC107656302
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10857881 ~ 10862322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012856
CCCAACAGTGAGGCCAGTGGCAAGTGCGGCTGTGTCTCATAAACGCGGAGTATCATGCCTTCCTATTTCCGCCGTGCTCGTTTTGTTGGTTTGTAAGAGcagcctgatttatttttcattcctgTTGGAAATCGCCAGTCTCCGCTGACAGCACAATGTCTACTGCACTAGAAAGCTACATCAACCGTATCCTCAAGCAAGTTCGTCATGTGTGTGCGGAAACCGATCACGCAAGGATGCATGTATGAATGGACGTGAATGATGGCTGTCGGAGACTCGGTGTGTTGGCCTAGTTTGCATGCGAGTGGATGTATAGTATACCCTTTTCAGGGGTAATGTTAATGATCAGTTACAAAGCAGGCAAACATCTCAAACTTTTTAAAGATACTTgcggttttatttttaattaacgatataaaacaaatatgcatgtTATTGTACTTACGTGTGCGATGCATGAGAATACATGTACCGTTTAGGAGTGATCTATGTTGTTGAAACGACGAGACACCTGATGATTTTATTGTACCTtatacataaagaaatacagtacaaaGGAGTACAAACTATTGCATTAGCTACGTGATCTGATTGAGTTGTTCATGTGTCAAAAGTTCTGGCCGGGGAACCTGTTTAACTCGGATAACTAATGATGCAAAGTGTATTTTGAGTGGAAACGTGTCTAATAAATAGTTTTCCTGCTGTATTTACCTTTACTGAGATCACGTGTGTCTATTCCCATGCGTTGTACCGATTATAAAGGTCTGAACAGTACtttacacatgcaaacacatgtGCCATTCAGGCTGTTATCAATGATCTTAAGTTTTTGACAGAATTATCCCTTAACTTGATGAACCGTAGGGACCGTGGCAATTATCACATCAGATGGCAGAATGATCGTGgGGACTCTTAAAGGATTTGATCAGACAATTAATCTGATCCTTGATGAGAGCCATGAGAGAGTTTTCAGTTCTACACAGGGAGTTGAACAAGTGGTACTAGGATTATACATTGTCAGAGGAGACAACGTGGCTGTGATTGGAGAGATCGATGAAGAAACGGATTCAGCCCTGGATCTGGGCAACATTCGTGCAGAACCACTCAATTCTGTTGTCCACTGACAGCACTGCTGGGATGGAGGTTTCAGATGTTGGCTTTTAGGGTACCTGGATATTCATCTAGGGAGAAATCCTCTTGTGGACTTCCttaaggactttttttttttgtgtgtgtgtgaatgttcaTCAGCGTTTTGTACTGaagacaaaaatagaaacaaagcattttttaatcTGCTATTCTTAAATTGCATGAGGTTTAATCATTACTGACTGATTACTGGTGCAAGACTGGCAGTAGAGTCTAGTTTGGATATCCAGAAATTTTAAATCCTGGAAGTGGAATTTCAAaatttgtatatttctataaaaCCTTTAGACTAATAAGAgcaatgactttttttttgctgttgcaAGTAAAACAATGGTCATGtagttttgcatttctttcatACTTGTACTCCTTTGTAGGTTTCATGTTTTCCAGTATGACATGCATGTTAGGAAATGTTGTTTGCAAATTACTTCcaaaagagcaatacaaaatctATATATCTCCTTTGACATTGATAAATTCCCATAGAAATGTCTGACGCCAGAGGAGGCTCTTAAACCAAACACTGTagcataaaaaaatatcacggatggggaaaacaaaaggcaTCTCAAAAATATACCATGCCACTTTTAAGCAGTGGCTGAAGACTTTAGAAATATCTCCCTTTGCAAAACAACTTCCTTAAAGAccatatgtatacatgtacttGCTTTATGGTTAAGCTGTTGTGTGGTGTTAACATGCAtaggctatttatttaaaaccgtttataaagaaaaaggtcagtgtttttctttattaaaatgaaaataatagtaTGGCTTCTCTTGGATGATTATTCAAGTAAGTTGAAGGGTTTTTAAGGCAGGGCAAAG
>TU50295
AGGCCAGTGGCAAGTGCGGCTGTGTCTCATAAACGCGGAGTATCATGCCTTCCTATTTCCGCCGTGCTCGTTTTGTTGGTTTGTAAGAGcagcctgatttatttttcattcctgTTGGAAATCGCCAGTCTCCGCTGACAGCACAATGTCTACTGCACTAGAAAGCTACATCAACCGGACCGTGGCAATTATCACATCAGATGGCAGAATGATCGTGgGGACTCTTAAAGGATTTGATCAGACAATTAATCTGATCCTTGATGAGAGCCATGAGAGAGTTTTCAGTTCTACACAGGGAGTTGAACAAGTGGTACTAGGATTATACATTGTCAGAGGAGACAACGTGGCTGTGATTGGAGAGATCGATGAAGAAACGGATTCAGCCCTGGATCTGGGCAACATTCGTGCAGAACCACTCAATTCTGTTGTCCACTGACAGCACTGCTGGGATGGAGGTTTCAGATGTTGGCTTTTAGGGTACCTGGATATTCATCTAGGGAGAAATCCTCTTGTGGACTTCCttaaggactttttttttttgtgtgtgtgtgaatgttcaTCAGCGTTTTGTACTGaagacaaaaatagaaacaaagcattttttaatcTGCTATTCTTAAATTGCATGAGGTTTAATCATTACTGACTGATTACTGGTGCAAGACTGGCAGTAGAGTCTAGTTTGGATATCCAGAAATTTTAAATCCTGGAAGTGGAATTTCAAaatttgtatatttctataaaaCCTTTAGACTAATAAGAgcaatgactttttttttgctgttgcaAGTAAAACAATGGTCATGtagttttgcatttctttcatACTTGTACTCCTTTGTAGGTTTCATGTTTTCCAGTATGACATGCATGTTAGGAAATGTTGTTTGCAAATTACTTCcaaaagagcaatacaaaatctATATATCTCCTTTGACATTGATAAATTCCCATAGAAATGTCTGACGCCAGAGGAGGCTCTTAAACCAAACACTGTagcataaaaaaatatcacggatggggaaaacaaaaggcaTCTCAAAAATATACCATGCCACTTTTAAGCAGTGGCTGAAGACTTTAGAAATATCTCCCTTTGCAAAACAACTTCCTTAAAGAccatatgtatacatgtacttGCTTTATGGTTAAGCTGTTGTGTGGTGTTAACATGCAtaggctatttatttaaaaccgtttataaagaaaaaggtcagtgtttttctttattaaaatgaaaataatagtaTGGCTTCTCTTGGATGATTATTCAAGTAAGTTGAAGGGTTTTTAAGGCAGGGCAAAGATGCTTTTCCCCTAACTACCAGTGATAccccaccccaaaaaacaacacactaaaTAGGTTCACCCTGCCACAGcttcaatgtttattttccgTTCAGAAGCCATGAAAtacagtgaaacacacacacacacaaaggctaCATTGAGTGAGCTCTCTTTCATACAAGCAAGCAGATTGACAGTGCTAGGAGCAATGTGTTCATAGGAATCCCAGTCTGCGCTTGTGGGATCAGGTCTAGATTATTTGATTGTGAATGCTGTAACTCTTGACCTGGCTCTTTTTATACAAGCAATATCATCAGCTCTGCTTTGATTATTCTAACTTTTGTTAAAGCCATTTCTAATGAGCTAGGTGTGTTTGAAAAAACCGAATTGGTATAAAGTGTGCAAGTATTGCTTTAAAGCTGTGGTGGGCAAGACCTCAAAAATGCTAAGCCCTTCTTGGATGGAGAATTCCTAAGAGTGCTTTATTGAGTCTTTTGGGATTTTATTTAAGCAGTTCAAAAACAGAGGAGATTCTCTGGCATATAAGAGGCCTGCAGCTCAGCAGACGCACAGTTTGTCACAGAGTACATTATATTTCTGACGAATTGGCCAGTCAgctttttttgcatacttcattGCAGCGAAGCATTTAGTGTAGCTCTGGACGGGTCCACTGCCAACAGCGATGTTACTCAGCTCTGCATGTGGATTCGAGGTGTAGACAGTAAGTTACATATGACAAAGGAATTGTTGGATCTTGCAGATTACACAGGCGCACACAAGGATCAGACTTTCTCGaaacattgttttttgaaagagcATTGTTTGCCATTGGAGAAACTAGTTTGTCATAACAGATGGCTGTCCTATGGTCGGAGTACATCGTGGATTTGTGACTTTGTTGAAAGCTCACATACTAAATGTGTTGGGAGTACATTGACAAATCCACCAGGAGGCACTGAAAGCTGCAAAGCTGGACTTTGGAAATCAACTGAAGGCTGTGATGGATAGAGTAACTAGTATATTTATGAAAActgcttattattttgtatcaatgtgttaaTCCCTTCATATGTAGATACGTATTTACTGCATTGTATTGCttgtaattgtaaaaatgtgGTCTTGCGGCCCAAATAGTTATTTGACAGATGGACTTGCTGCCCACCGATTAATTtaggttgcccaccactgctTTAGTAGGTAATAGATACAAAAAAGTTTTACAGCATTAACCAATAGTGGTCAAATTGtcatattttacataaacattacACACTTGATTGTCAGTTATATCATTTTAAGTATTTCAAATTGATTCTATTCTTTTGGTTTAGAAAACGGTTTGGTTTAGAAAAGTGGGATTATTTCTAAATTGGTGAAATAAAGGCTACAGACATAAAATCGATACTGaatgacattttcaaacagGAGCAGAGATAAAAGATTAATTAGCTTGTTCACTAGAAACCTTTTTTCCCTCAAAAGGTATCTCTCAATTGCAATTAAGAACAATAGCACAAGAACAGTTCCATTAAAAAGTACATATAGAtttagaaaatggaaaaatgtttttgtaccATTTAATGGTAAGTAGCTAATGTAACATGTACACAAATAATAACTTGGCAATAATATGTTCAAGATATGGATAATACTCTGAGTGGAAGCAATGTATGCTGTACAGAACTGCTAATACACGGCAGACCGCATGGCAGTTATATGGAATGTACCGATATATTGTGTAACGATAAAAATGTCTGATCCTGAAAGATTGTTGAAAGAAAGCAACACTTGACGGTCATATTCAGCTGATGAAAATATGGCTCTGATGATATCAATTGAAATTCATGTAGTGTTCCTCCTGAGCGTATAAGTGCAGTGTGCAACATTTCGAATTCTGcgaaaagcataaataaattaaagtttaatgtaat

Function

symbol description
lsm8 Predicted to enable RNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).

NR:

description
LSM8 homolog, U6 small nuclear RNA associated

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012856 False 1994 mRNA 0.38 3 10859802 10862322
TU50295 True 3227 lncRNA 0.37 4 10857881 10862312

Neighbor

gene id symbol gene type direction distance location
AMCG00012857 atp6v1f,LOC101079638,LOC101164034,LOC104938441 coding downstream 35028 10820259 ~ 10822853 (-)
AMCG00012852 NA coding downstream 201748 10644390 ~ 10656133 (-)
AMCG00012853 NA coding downstream 213494 10641718 ~ 10644387 (-)
AMCG00012854 NA coding downstream 226927 10630026 ~ 10630954 (-)
AMCG00012851 NA coding downstream 231606 10612609 ~ 10626275 (-)
AMCG00012861 NA coding upstream 80518 10942840 ~ 10979099 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding upstream 145611 11007933 ~ 11030339 (-)
AMCG00012868 capza2 coding upstream 204828 11067150 ~ 11084825 (-)
AMCG00012869 NA coding upstream 234163 11096485 ~ 11120770 (-)
AMCG00012875 cav1,LOC106561554,LOC107574005,LOC107574842,LOC107679630 coding upstream 285970 11148292 ~ 11161963 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 117580 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 118503 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 119284 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 129061 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 306504 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 1374907 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1721189 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1878853 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 2045125 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2606983 13469305 ~ 13558179 (-)
AMCG00012858 NA other downstream 104183 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 1705476 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2953426 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4161957 6638480 ~ 6695924 (-)
G39487 NA other downstream 4401703 6455721 ~ 6456178 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1378074 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2034198 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2252571 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3478094 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 4857191 15719513 ~ 15722457 (-)

Expression


Co-expression Network