AMCG00012861


Basic Information

Item Value
gene id AMCG00012861
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10942840 ~ 10979099 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012861
ATGCTTTCGACTGGAGCCATATTCAAGATCCCACTCGTCCTCGCTGCCGTCGCTCTCATCCCCGGCCGGGAACGCGTTGCCGCCATCGTAAAGCATGGCGGTCCTTCTGCGCCTGCGGGAGCAGCCGTGAGGACGAGGCGCCTATGGATAGCCGGAGGGCCCAAACCGTCCGTGCTATGCAACAGCGAGGTGGaCTATGGACACATTGTGCTGAGTCAAGGTCAGGACAGGAGAAGGAGTGCGTCCTGGCAAAGAAGCATTTGTCACCACCAACACGGTGTAATGCCAGTAAGTTGGACAACACCAATTTTAAGAAAGGGATACAGGAGGAAAATAGAGTTATCAGATGTATACCAAGTACCATCTTTTGATTCAGCAGACCATCTTTCAGAACGATTGGAAAGTGTGGTTGTGGTCTTTGGTAGAGAATGGGACAGGGAACTTGCCTCATCAAAGAAAAAACCCAATCTTCTCAACGCCATTCGACGCTGTTACTTCTGGCCTTTTGTCTTTTATGGGGTCCTGTTGTACTTTGGGGAAGCATCAAAATCTGTTCAGCCTCAGCTTCTGGGTAGAATAATTGCGTCATTTGATCCAGTCCACGACCCAGAACGCAGTCAAGGTTTCTACATGGCGCTGGGGCTCACGTTGCTTTTTGTTGCAAGATTTTTACTTCTCCAACCTGCCATCTTCGGCCTGCATCATTTAGGGATGCAGATCAGAATAGCTTTGTTTAGCTTAATATACAAAAAGACATTAAGATTATCCAGTCGTGTTCTTGACAAAATCAGCACCGGTCAACTGGTCAGTCTGATGTCTGCTAACCTCAACAAGTTCGACGAGagcCTAGGCCTAGCTCACTTTGTATGGATTACACCTCTGCAGTGTATGCTTCTGATGGGCTTTATCTGGCAGCTGATTGAGGCCTCATCCTTCTGTGCCCTGGCAGCCCTTACTCTCCTGGCCCTGATCCAAGCATGCCTCTCCCAGAGGATGGGGCCCTCCAGGGATGAGATGCAGCTGACGAGAAAGATTGGTTACCTGAGATACTTCTACAGCGCATCGTACTTTTTTTCGGCCATCTTTGTGGTGATTTGCGCCATCGTGCCTTTTGCTCTCACTAAAGGGATCATCCTGCGCACAATATTTACCACGCTGTCATACTGCATGGTCCTTAGAATGACTCTCACAAGGCAGTTTCCGGGCTCTGTGCAGATGTGGTATGACACTTTGGCGCTCATCAACAAGATCGAGGATTTTCTAAAGAAAGAGGAGTACAAGGTTTTGGATTACAATCTCACAACAACAGAAGTAGAGCTGGTTAATGTGACCGCATCCTGGGATGAGggTATAGGAGAGCTCTTTGAGAAAatcaagcaagaaaacaaagacagtGGTCATCCAAATGGAGATGGAGGACTGTTTTTCTCTAACTTGTATGTTACACCGGTCCTGAGAAACATCAACTTGTATCTTGAAAAGGGGAAGATGTTGGCTGTCGCAGGGTCAACAGGTTCAGGCAAGACATCGTGGATCATCCCTGGAACCATCAGAGAGAACATTGTGTTTGGACTGACTTACGATGAATACAGATACACCAGTGTCGTTAAGGCCTGCCAGCTCGAAGAGgatCTGGCAATTCTACCTGATAAAGACAAGACCTTTCTAGGTGAAGGAGGCGTCACTCTGAGTGGTGGACAGCGTGCCAGGATCGGCTTAGCCAGAGCAGTGTACAAAGATGCTGATGTGTACCTTCTGGATTCCCCTTTCACCCATCTGGATATTGCGACAGAGAAGGAAATATTCGAAAGGTGCTTATGCAAACTCATGGCTAAGAAAACACGCATTGTGGTCACTTCCAAGttggatcatttaaaaaaggcagaCAAGATCTTGCTGTTGCACAATGGCACCTCCTATTTCTATGGGACCTTCTCCGAACTGCAGTCTCAGAGGCCGGACTTCAGCTCGCTGCTGATGGGCCTGGAGGCCTATGACAATATTAACGCTGAGCGCAGAGGATCTGTCCTGACTGAAACTCTACGCCGAGTGTCTGTGGACGATACTGCAGGCTTCCACCCAGACCCTACCATTCAGACGTTCAAACACACCTCTTTAGATCGGccagagaagaggaggaagtcCTCCGTTATCATCAATCCCCTTGCGGCTGCCAGGAAGTTCTCCCTCATGCCCACCGAGGAAGACACTGTTGGCGAGCTTCAGGAGCGGCGGTTCTCAGTGGTGCCGGAAAACGAGCAGGTGGAGGAGGTCCTTCCGAGAAGTAACGATTTCATCCCCGGGACCAAATATCAGGGACAGAGACGTCAGTCCGTCTTGGCATTTATCACCAACGCTCATGGAGAAGGGCGGCGGGCTCAGATGCACTCCTCATTTCAGAAGAGGCTGTCCATTGCCCCGCAGAGCGAGCTGGCCACCGAGCTGGACATTTACGCGCGGCGCCTTTCAAAGGACAGCGCTTACAACATCAGTGAGGACATTGACGAACAAGACATGGAGgaaTGCTTTGCTGATGAACGTGAAAATTTCTTTGAAACTACCTCATGGAGCACATACTTCAGATATGTGACAACGAATCGAAACCTTATTTACGTGCTCATCTTTATCATGGTTGTCTTTGTGATTGAGgtgAGCGGGTCATTAATTGGAATATTGTTAATTACTGAGAAGATCTGGAACAATGGCACTGACAATGACACTGCAAATTCATCGTCATCAGGAGTTCAGTACGCAGTCATTATCACCCCCACCAGCGCTTAttacatcatatatatttacGTGGCCACTTCAGAGAGCGTGCTGGCCCTGGGCTTCTTCAGAGGGCTTCCCCTGGTTCACACACTGCTCACCGTCTCCAAAAAACTCCATGAGCAGATGCTGAGCTCAGTGCTGCGAGCGCCAATGTCCATCCTCAATACCATGAAAACAGGCCGAATTATGAACAGGTTCACCAAAGACCTGGCGACAATAGATGACATACTGCCTCTCATTCTCTTTGATTTTGTGCAGGTTACGCGAAGCCCAGTGTTTTCCCACCTCATCATATCCCTTAAAGGGCTGTGGACAATAAGGGCTTTTGGACGACAGACTTATTTCGAATCCCTTTTTCACAAGGCCTTGAACATTCACACAGCCAACTGGTTCCTCTACATGTCCACATTGCGATGGTTCTTGTTCAGGATCgacatgatttttgtttttttctttgctgctGTTGCCTTCATCGCCGTTGGAACAAACCGTAAGGCTACGGTTATGTTGATTGATATAATTGAGATTGCTCTacGTGATAAACCCGGAGAAGTTGGAATAATTATTACTCTGGCCATGCTAATTGTGGGAACCTTTCAGTGGGCAGTTATCACCAGTATAACTGTAGATAGTCTGATGCGCTCAGTCGACAGAGTGTTCAGATTCATCGACTTGCCTTCAGAGGAGCCTAAGCCAACTGGCCAGCAGAAAAAAGACACTGGCCTGGTGATTGAGAACGTGCATGCAGAGGATGGAGACGGCTGGCCGTCCAGAGGACAAATGAACGTCCACAACCTCACAGTCAAATACACGGAAGGAGGCAGAGCCGTCCTTCAGAACCTCTCCTTCTCAGTGAACGGCGGTGAAAGGGTGGGAGTGCTGGGAAGAACAGGCTCGGGAAAAAGCACGTTGCTCTCTGCGCTGCTCCGGCTGGCTTCTACCGAGGGCAATATCACCATCGATGGCACTTCCTGGAATGCCGTTCCTTTGCAAAAGTGGAGAAAAGCATTTGGTGTCATTCCTCAGAAAATATTCCTGTTCTCTGGGACTTTTCGTATGAATCTGGACCCATATGGGAAATGGAGTGACGGGGATCTGTGGAGGGTGATGGAAGAGGTTGGCTTGAAGTCCATAATCGAGCAGTTTCCAGATAAACTTGATTTCCAGCTCGTGGATGGAGGCTGCGTCCTCAGCAACGGCCATAAGCAGCTGATGTGCCTGGCACGCTCCATCCTGTCCAAGGCCAAAATCCTGCTCTTGGATGAGCCCAGTGCTCACCTGGACCCCATaaCCCTACAAGTTTTGAGGAAGACGCTGAAGTATGCCTTCTCCAACTGCACTGTGATCCTGTCAGAGCACAGAGTCGAGCCGCTGCTGGAGTGCCAGTCCTTCCTGATGATCGAGGGCAGTTCAGTGAAGCCATACGATTCGATCCAGAAGCTCCTGAACGAGACCAGTCAGCTGAAGCAGGCGATGAGCCACGCCGAGAGACTGAAGCTCTTCCCTCTGCATCGCAGGAACTCCAGCAAGCGCAAACCAAAACCCAAAATCACAGCTTTACAGGAAGAGGCTGAGGACGAGTGGTACTTGCCTTGtacttctgctgctgctgctgctgctgatgtgaGGCGTGCCGTGAGGGCGCGGGGCGTTTTTATTCATAGGAACGGGCAGGTGGGATTTCAGTCTAGCCTGTCCGGAGACACTGATCCTTTTGTCGCTGCTGCCGGTTCCAGGAGATGGGTGAAAAGAAGTGACAAGAAGTCACTGCATGTGTTTTGGATTGTCCAGGGTTGCCTGTTTATTTTGGGAGTGAGGAAATCCTCAGAGCTGaatgtaaatgaaaagcaaatgccCAGACTGGAACCGTACCTTGGCCAGACCCAGGGGGGAAAAGAGACTGAGATTGTATCTAGAACATTAAGCAGCCAACACAtGAATAACTCTTCAGAGAGATTACCTTCTCTCAGGGTGCTGGCCCCACTCCAGGCCTGCGTGAGGGGCCCCTTCTTGCGTGGGCTGGTGTTCACTTTCCTCCAGGAGCCACATTCTCTGCTCTTCTTCCCGCTGCCTTTGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05031 CFTR, ABCC7; cystic fibrosis transmembrane conductance regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012861 True 4851 mRNA 0.50 29 10942840 10979099

Neighbor

gene id symbol gene type direction distance location
AMCG00012857 atp6v1f,LOC101079638,LOC101164034,LOC104938441 coding downstream 119987 10820259 ~ 10822853 (-)
AMCG00012852 NA coding downstream 286707 10644390 ~ 10656133 (-)
AMCG00012853 NA coding downstream 298453 10641718 ~ 10644387 (-)
AMCG00012854 NA coding downstream 311886 10630026 ~ 10630954 (-)
AMCG00012851 NA coding downstream 316565 10612609 ~ 10626275 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding upstream 28834 11007933 ~ 11030339 (-)
AMCG00012868 capza2 coding upstream 88051 11067150 ~ 11084825 (-)
AMCG00012869 NA coding upstream 117386 11096485 ~ 11120770 (-)
AMCG00012875 cav1,LOC106561554,LOC107574005,LOC107574842,LOC107679630 coding upstream 169193 11148292 ~ 11161963 (-)
AMCG00012873 tes coding upstream 227452 11206551 ~ 11228481 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 202539 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 203462 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 204243 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 214020 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 391463 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 1258130 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1604412 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1762076 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 1928348 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2490206 13469305 ~ 13558179 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 80518 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 189142 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 1790435 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 3038385 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4246916 6638480 ~ 6695924 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1261297 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 1917421 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2135794 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3361317 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 4740414 15719513 ~ 15722457 (-)

Expression


Co-expression Network