G47040


Basic Information

Item Value
gene id G47040
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43919669 ~ 43919967 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58655
cagtccctggtcctctcccgcctggactactgcaactccctcctggccggcctgcctgcaactactacccgccgctccagctcatccagaactctgcggctcgtctggtgtctctctgccccgattcgcacacgctactccactgctccgctccctccactggctcccgatagcagcacacattcagttcaagactttgaccctcacctactgctgtctcgaccacactgcaccaagctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcttccagtgcca

Function

GO: NA

KEGG:

id description
ko04390 Hippo signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU58655 True 299 lncRNA 0.60 1 43919669 43919967

Neighbor

gene id symbol gene type direction distance location
AMCG00013824 NA coding upstream 223344 43687352 ~ 43696325 (+)
AMCG00013818 NA coding upstream 244428 43672233 ~ 43675241 (+)
AMCG00013816 NA coding upstream 251185 43657227 ~ 43668484 (+)
AMCG00013821 NA coding upstream 288071 43630468 ~ 43631598 (+)
AMCG00013817 NA coding upstream 298960 43618051 ~ 43620709 (+)
AMCG00013826 NA coding downstream 184204 44104171 ~ 44123031 (+)
AMCG00013827 rhoc,rhocb,LOC106582735,LOC105908082,LOC107668165,LOC108271788,LOC108427591,LOC107679717,LOC107569805 coding downstream 225504 44145471 ~ 44150277 (+)
AMCG00013829 NA coding downstream 283447 44203414 ~ 44221190 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding downstream 609751 44529718 ~ 44530827 (+)
AMCG00013834 NA coding downstream 715512 44635479 ~ 44661638 (+)
G47032 NA non-coding upstream 207658 43700924 ~ 43712011 (+)
G46949 NA non-coding upstream 455663 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 467654 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 476373 43441497 ~ 43443296 (+)
G46905 NA non-coding upstream 567254 43350853 ~ 43352415 (+)
G47080 NA non-coding downstream 302441 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 369090 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 378302 44298269 ~ 44298664 (+)
G47110 NA non-coding downstream 409326 44329293 ~ 44329547 (+)
G47158 NA non-coding downstream 1041642 44961609 ~ 44963472 (+)
G46945 NA other upstream 478971 43438492 ~ 43440698 (+)
G46862 NA other upstream 830026 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 875233 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 1257825 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 1270915 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1114805 45034772 ~ 45095669 (+)
G47206 NA other downstream 1406691 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 1896405 45816372 ~ 45823228 (+)
G47398 NA other downstream 2014692 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 2023604 45943571 ~ 45959194 (+)

Expression


Co-expression Network