G47055


Basic Information

Item Value
gene id G47055
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44116240 ~ 44123206 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58676
CTAAGCACAACACACTCTACTCCTGAGCAACTCTCAGACTGCACAGACTTCTGACGCGTATTATGAAGAAAGCAAAGACTCCAATCCACTCAGGGTTGTTCcactttacttttaaataagacGTAACTGCAAAACATACACTGGCAATTATAGCGAAGGTGACAAAAGAcgacacttttttttaaacaaaaaagtattttatttatcattatgtTTAGGGATACAGGTTATTTAGTCTTATTGAACAACTGATCACTGCTACTCAGTGTGAtagttaaatacaaattataatttgctttattgtacACTGTACAGTTAATACATATGACCaccttcaaataaacaaaaactttacagtactgaaagaaattaaaatctcCTTAATTCACCTAGTGGAATGGTACATCGTCctgcatcaaaataaaacaagggtCAACGTGTTTTTGAGAAGAGGTGGATTAAGgacaaaacaaacttaaaatacaacagagaaatataacaaaaaaatcccaatTAATAACTTAATGAGGGGAAAATGCAGAATTCgactaaaacaaacatcagcTCTTACAGAAGCCGTCTTCAAGTAAGAGACTCCTGTGTCAATACATCAGGACCACTCTCACCACCAGGACTCTCACCCACAGTCAAATGCCAGAATTGTGTTTGGGTGCGCAGTGACAGCCGGCAAGCCTCGAACCATCCCTCGGCACCCTGCACCTCTCTACTCATATCACAGACAGTAATACGCACAGTGTGACGTTGGATCTCTATTATCATGAAACTCAAGCCCAAGATACTCTTGAAGAGCAACAATTCCCATAAAACATCCTTAGAAATGAGTCCAGggccgtctctctctcttctctgtgcCGTTCTCCATCCAGTTAAACTTTAAAAACcctgctactgctactacaatCCCAGTAGCTGATGTCCCAATAGTTTCAAACCTGGCAAAGACTTAAATGAATCAGCTTCTTGTTTAAATGACCAATAACATACGTATTACAAGTCTTTAGGGTGACTTCTTAACTCTATCGCGTCTGTCCATGGACAGAGGATTTGACTAAATACTGTAACTgacatgaataaaacacaatctCTGCCAAAGCAACTGTGCTCAGGGAAAGATTCACATAAACagattgcaaaaataataagcCATGTATTTTCACACAGTGCTCTGCCATAGCGTATAAAAATACTCCGTAGGACTGAGTGTAGCGCCAGAGTAAGGAAACCAATGGGGATTAGTCTACCTATAGCCGCAGATCATTCAGAATCTAGATTGGGGGTCTGGAGAGACAGTCGCCGCGTTTCCATCCTAGCGAAGCTTGGCGTTATGTaagtagatttgttttataagcACTCGTTTATTTAAAGAACTAACAAGACTGTGGCTCTCCAGCTTTGCACACCCCTGGTCCAGACCTACGTTTGCAGATCCAACCCTCGTAGTAAAAGGCTTAATCCAGAGATCTGAGATGGTCCGTGCCCTCTTTCCCCCTCCAAGCCAAGCATACGAAGGCAGCTAAATCTATCATGCACGGCATTGTGGGATATTTCGATCTCTTTCTGGAGCGGCGTGTTCTGCGCTGTCATTGCCCGCTGTGAGGATGACACACGAGCACAACGCGTCCTTTAGGTAGAATAAAGAGAGCCTACCTCTTTCTACTGGTGTGAAGTGTCCCTTGAGCACaggacaggaaaacaaatcggAAAACCGAACTAGGACTAGAGACACGGATGGACGGGTTAAACAGACCACCCTAACTGCATGTCGACCAGCACTGCTTAATCAATACGTCTGATCGACTAGTAAACACTGTtaaatactgttaaatttcTTGGCTTAGATCCCTGTGATTATGCTACTTAAGAACTATAgtaaaccctaaccctaatggGAAACTTCTGTACTAGCACTACTGGAGAGAACAGAGGTTTCCCATTAGGTGGATGATGGCCAGCGCACAGCAGCCCCCGGAAATGTTGAACGATGCCTTTTCCCTTTCAATCTGGTCATCCTAAAACCAGAACAGAAACAGGGAAGTGGACAGTCAGGGACAGCCTGCTTCTCGGTTTCAGGCTGCAGTGATTAAGGCACCACGGTCTAGATGCACAGCACCAGCTCAGACTGCCTGCCAACCCTGGCCTGAAGCCCGACATCTCCCCGCACAGAAGCACCCCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58676 True 2196 lncRNA 0.43 2 44116240 44123206

Neighbor

gene id symbol gene type direction distance location
AMCG00013825 LOC106517667,LOC108231490,LOC103356074,LOC106582736,LOC107098533,LOC105928018 coding downstream 109607 44004877 ~ 44006633 (-)
AMCG00013822 slc16a1b,slc16a1a,LOC107591766,LOC107711946,LOC107669643,LOC107717534,LOC107679710 coding downstream 405245 43703998 ~ 43710995 (-)
AMCG00013823 NA coding downstream 416099 43694907 ~ 43700141 (-)
AMCG00013819 NA coding downstream 522774 43569566 ~ 43593466 (-)
AMCG00013813 NA coding downstream 566994 43538890 ~ 43549246 (-)
AMCG00013828 NA coding upstream 37446 44160652 ~ 44177626 (-)
AMCG00013831 LOC106566046,LOC106582739,LOC105908306 coding upstream 62806 44186012 ~ 44202447 (-)
AMCG00013830 wnt2bb,LOC107562779,LOC107717539,LOC107669677,LOC107679746,LOC107711930,LOC104932064 coding upstream 119309 44242515 ~ 44256042 (-)
AMCG00013832 NA coding upstream 168642 44291848 ~ 44316684 (-)
AMCG00013835 LOC107556298 coding upstream 547882 44671088 ~ 44677499 (-)
G47041 NA non-coding downstream 196278 43919661 ~ 43919962 (-)
G46990 NA non-coding downstream 549245 43566795 ~ 43566995 (-)
G46982 NA non-coding downstream 593358 43522328 ~ 43522882 (-)
G46855 NA non-coding downstream 1046067 43069972 ~ 43070173 (-)
G46849 NA non-coding downstream 1046504 43035563 ~ 43069736 (-)
G47082 LOC100696538,LOC103362809,LOC102199655,LOC108254710,LOC103467398,LOC102777028,LOC108265463 non-coding upstream 2560 44125766 ~ 44148931 (-)
G47096 NA non-coding upstream 99180 44222386 ~ 44223384 (-)
G47109 NA non-coding upstream 165849 44289055 ~ 44291787 (-)
G47117 NA non-coding upstream 373780 44496986 ~ 44497305 (-)
G47139 NA non-coding upstream 575021 44698227 ~ 44699767 (-)
AMCG00013820 tmem167b other downstream 501661 43609282 ~ 43614579 (-)
G46742 NA other downstream 1415172 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 1660482 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 3479012 40618343 ~ 40637228 (-)
G46423 NA other downstream 3507712 40603601 ~ 40608528 (-)
AMCG00013846 NA other upstream 1215653 45338859 ~ 45344015 (-)
G47261 NA other upstream 1500032 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 1796430 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 1838984 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 1952223 46075429 ~ 46083542 (-)

Expression


Co-expression Network