G47958


Basic Information

Item Value
gene id G47958
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48162211 ~ 48162427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59854
CTGAAGGAAAGCGGGGGTGAGGGAGGCCGTGGGCAGGGAGGGGCTGGCCAGGTTGATGGGGCTGAAGTCGCTGCTGGTGACCACCAGGGTGGGCGTCAGCTCCAGGCCTTTGGGCTTCTTGGACTTGCCGCTCTGACTGCTGCTGCTCAGCGCAGGGGACCTCTCTGCCTCCTTCTCAGGGCCGCTGCCATCATCCTGGGCCTGGGGGGGGCGCTGC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU59854 True 217 lncRNA 0.68 1 48162211 48162427

Neighbor

gene id symbol gene type direction distance location
AMCG00013951 NA coding upstream 3966 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 18294 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 65128 48085959 ~ 48097083 (+)
AMCG00013941 LOC106566646,LOC106571888 coding upstream 431937 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 618777 47541233 ~ 47543434 (+)
AMCG00013960 NA coding downstream 64988 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 74336 48236763 ~ 48239245 (+)
AMCG00013963 NA coding downstream 255830 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 328117 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 340742 48503169 ~ 48504611 (+)
G47937 NA non-coding upstream 101397 48059915 ~ 48060814 (+)
G47936 NA non-coding upstream 102619 48058733 ~ 48059592 (+)
G47810 NA non-coding upstream 578309 47552159 ~ 47583902 (+)
G47804 NA non-coding upstream 616620 47545192 ~ 47545591 (+)
G47797 NA non-coding upstream 740982 47421016 ~ 47421229 (+)
G47959 NA non-coding downstream 1444 48163871 ~ 48164673 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding downstream 2368 48164795 ~ 48165036 (+)
G47961 NA non-coding downstream 6212 48168639 ~ 48169640 (+)
G47972 NA non-coding downstream 16764 48179191 ~ 48179721 (+)
G47980 NA non-coding downstream 38199 48200626 ~ 48202443 (+)
AMCG00013943 NA other upstream 342488 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 934242 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1088503 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2203017 45943571 ~ 45959194 (+)
G47398 NA other upstream 2220305 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 77273 48239700 ~ 48258433 (+)
G48018 NA other downstream 106327 48268754 ~ 48269272 (+)
G48026 NA other downstream 118636 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 371459 48533886 ~ 48546200 (+)
G48142 NA other downstream 592526 48754953 ~ 48760712 (+)

Expression


Co-expression Network