G48516


Basic Information

Item Value
gene id G48516
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49744946 ~ 49747551 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60612
GCATGAGAGTGGCTAGATTAtcgtatatttatttatgcgcagacacccttatccagggaacTTACAGATCACACAGCATCGCAAAAAAGTGAGAAATGTAACATTCAgattggggtggggggcacaGTTCTCACCCCATGCTGGTGTACAGTGTTGTCCACACAATGGGGAAGGCGCGATTGGGGGGGCGCCAGGACGGCTTCTTCAGCGTCTCGTACCAGGTGGGTACCGCTCGGCGTGTGTACAGCCAGCCCACGAAGCCCCCCAGGTGGGGCAGCGCACTGAACCCCAGAGCATGGGCCCACatcactgcagagagagatagggagggaGAGGATTTGCACTGCAGATACACAGCCAGACAGCGCTGCACCTGCGCAGTGTGGTACTGACAATGCAACAGAGCAGTATAACTGGCCGCACACAACATGCCTGACGAGGTGATTGGGAGcattaaaatgattgacaagcatttcctgcaaagtgattggctgcacacatgattgacagttactcctaCCACAATCCAATGTTTCCGTGTCTGCGgcgatacaatacaataaaatactacgtcacattgttttttgtttttgtttaattatgaaaGGTGGAAAGCACATTTATAGCACATCTTAAAGTTGAAttccaaatatatatgcaaaaatatattaaaacataataaaaaatacaagtcaGGAAGCCTGCGCTGTCATTGATTATAAAACATTtggatttgatttgtttctgcCCTGATGCCCCCGGGTCTTTAGTGCTTAGTCTCCAGGACGGGCCTCAGATGGGTGTGTAGCTCATTGAGCAGAGGAGGAAAACATGGGCCGGTTGTACTTTACTGAAAACCAAATAACCCCACCCTAGACACCACTCTcttacagagacagacacaccacacacacacagtcacacaaacaaacacagttactcacacacacacacacacacacacagccactctCTCACACAGTTACTCacagtcactcactcacacacacacacacacacacacacacagttactcacagtcactcacacacatcacacaaacacattcacacacacagtcactctcacacacagtcacacaaacaaacacagttactcacacacacacacacagccactcacagtcactcacacacagttactcacagtcacacacacacacacagccactctCTCACAGTTACTcacagtcactcacacacagttactcacagtcacacacagccaCTCTCTCACAGTTACTCACAGTGACTCACACACAGTTACTCACagtcactctcacacacacacagttactcaCATacagtcactcacacacagtcactctcacacacagtcacacaaacacattcacacacagtcactctctcacacacacagtcacacagtcactCTCTCACAGTTACTcacagtcactcacacacagttaCTCACagtcactctctcacacagtcacacacagttACTCACagtcactctcacacacacagtcactctctctcacagttactcacacagtcactcacacacagttaCTCAGTCACTCACACAGTCACTCTCACACA
>TU60614
GCATGAGAGTGGCTAGATTAtcgtatatttatttatgcgcagacacccttatccagggaacTTACAGATCACACAGCATCGCAAAAAAGTGAGAAATGTAACATTCAgattggggtggggggcacaGTTCTCACCCCATGCTGGTGTACAGTGTTGTCCACACAATGGGGAAGGCGCGATTGGGGGGGCGCCAGGACGGCTTCTTCAGCGTCTCGTACCAGGTGGGTACCGCTCGGCGTGTGTACAGCCAGCCCACGAAGCCCCCCAGGTGGGGCAGCGCACTGAACCCCAGAGCATGGGCCCACatcactgcagagagagatagggagggaGAGGATTTGCACTGCAGATACACAGCCAGGTGTGCGGGCATGTGGCGCAAGGTGCAGCGCAGTCTGGCCCTGGGGCTCCGCTTCACTCCAGCTGCGTCTCCGTGACTCAGCAGAGCCCCTTATCGCCTCCTGGGCGGAGGCCCGACCCCGCACACTGGGCTGTTATCGGGTGGGAGGAGGAATCCAACCACTTCAACGGTTGACGCTCACGTACAGCACGAAGTTTCATAACCAcataattatcattaattaCATCACAACTGCGGAGGGAGGCGGCGATAACAGCCCAACAGCAGCTGTACAGCGACTCCCCCTGCGTGTGCAGGACCCGCATGTCTGCGGTACTGAACACCGCCGCGCTGCCAACCTCCAGTTTCCCATTTACTACGGATACTACTATAGGGCGACTGAGTCAACCTGCGGCTCCACTGGCTCAGTCGCTTACACGTGAAACTCGCCGCATCAGCAGCTCGGCTGCCTGGCGCACGATACGCGCATCTGGACTGTGCGGGTCAGGGACACGTCCAGCGACGGCGCCCGCACTTTGTGCACACCGGGGCAGATGCAGTGTGTGTCGGTGCCGGGCGGCCCGTCCCCCGGGGGGTGCGCAGCTCTTACCTTTACAGCAGCAGCTCAGCGACCGTCCGACCCCCAGCAGCGCCGCAGCAGCTTGTGTAACGCGCCGCGTGGGGGCGGGGTTAAAGCGGGCACGCTGCGTCGGGGGCGGGGCTAAAGCACGCAACACTGCACGCACAGCTACGCAcagctgcggacatctgcgcaacacagagcaacacaagAGTGCGAAGCTCAGCCGAGACTACAGGCTCTGCCACCGAATTACCGAGTGAATATCTGTGCTGACTGAACACCTTACTGAGCCCCCTGTGACGGGCCCCCGGGGGCCAACCCTGCAGCCGGCAGTGACGCCGGCCTGTGTGAATTACAGCTCAGACTCTGGGGAATGACGCCACAGACACAACCTGTGGATCAGCGCCGCTGCTCCATCGTCCGAGCCGGTCCGAGCCGGTCAGAGCCGCCCCGCAGAGACAGCGCTGCACCTGCGCAGTGTGGTACTGACAATGCAACAGAGCAGTATAACTGGCCGCACACAACATGCCTGACGAGGTGATTGGGAGcattaaaatgattgacaagcatttcctgcaaagtgattggctgcacacatgattgacagttactcctaCCACAATCCAATGTTTCCGTGTCTGCGgcgatacaatacaataaaatactacgtcacattgttttttgtttttgtttaattatgaaaGGTGGAAAGCACATTTATAGCACATCTTAAAGTTGAAttccaaatatatatgcaaaaatatattaaaacataataaaaaatacaagtcaGGAAGCCTGCGCTGTCATTGATTATAAAACATTtggatttgatttgtttctgcCCTGATGCCCCCGGGTCTTTAGTGCTTAGTCTCCAGGACGGGCCTCAGATGGGTGTGTAGCTCATTGAGCAGAGGAGGAAAACATGGGCCGGTTGTACTTTACTGAAAACCAAATAACCCCACCCTAGACACCACTCTcttacagagacagacacaccacacacacacagtcacacaaacaaacacagttactcacacacacacacacacacacacagccactctCTCACACAGTTACTCacagtcactcacacacagttACTCACagtcactctcacacacacagtcactctctctcacagttactcacacagtcactcacacacagttaCTCAGTCACTCACACAGTCACTCTCACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60612 False 1586 lncRNA 0.47 2 49744946 49747551
TU60614 True 2129 TUCP 0.55 2 49744946 49747551

Neighbor

gene id symbol gene type direction distance location
AMCG00014035 NA coding downstream 41573 49697861 ~ 49703373 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding downstream 50782 49689679 ~ 49694164 (-)
AMCG00014024 NA coding downstream 64584 49678320 ~ 49680362 (-)
AMCG00014023 NA coding downstream 137752 49595783 ~ 49607194 (-)
AMCG00014012 NA coding downstream 186186 49557804 ~ 49558760 (-)
AMCG00014036 NA coding upstream 2917 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 35721 49783272 ~ 49788746 (-)
AMCG00014048 NA coding upstream 43792 49791343 ~ 49794766 (-)
AMCG00014047 NA coding upstream 49295 49796846 ~ 49804601 (-)
AMCG00014045 NA coding upstream 66498 49814049 ~ 49818276 (-)
G48512 NA non-coding downstream 10774 49733909 ~ 49734172 (-)
G48509 NA non-coding downstream 17939 49726288 ~ 49727007 (-)
G48508 NA non-coding downstream 18697 49725735 ~ 49726249 (-)
G48494 NA non-coding downstream 69196 49663092 ~ 49675750 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding downstream 117179 49623810 ~ 49627767 (-)
G48517 NA non-coding upstream 1038 49748589 ~ 49749282 (-)
G48510 NA other downstream 15891 49728504 ~ 49729055 (-)
AMCG00014033 NA other downstream 20709 49721746 ~ 49724237 (-)
G48506 NA other downstream 23420 49719765 ~ 49721526 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 246316 49494727 ~ 49498630 (-)
G48373 NA other downstream 260179 49484500 ~ 49484767 (-)
AMCG00014043 tmcc2 other upstream 116771 49864322 ~ 49930152 (-)
G48570 tmcc2,LOC106583086,LOC106565656 other upstream 123442 49870993 ~ 49918397 (-)

Expression


Co-expression Network