RNA id: TU60612


Basic Information

Item Value
RNA id TU60612
length 1586
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G48516
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49744946 ~ 49747551 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATGAGAGTGGCTAGATTAtcgtatatttatttatgcgcagacacccttatccagggaacTTACAGATCACACAGCATCGCAAAAAAGTGAGAAATGTAACATTCAgattggggtggggggcacaGTTCTCACCCCATGCTGGTGTACAGTGTTGTCCACACAATGGGGAAGGCGCGATTGGGGGGGCGCCAGGACGGCTTCTTCAGCGTCTCGTACCAGGTGGGTACCGCTCGGCGTGTGTACAGCCAGCCCACGAAGCCCCCCAGGTGGGGCAGCGCACTGAACCCCAGAGCATGGGCCCACatcactgcagagagagatagggagggaGAGGATTTGCACTGCAGATACACAGCCAGACAGCGCTGCACCTGCGCAGTGTGGTACTGACAATGCAACAGAGCAGTATAACTGGCCGCACACAACATGCCTGACGAGGTGATTGGGAGcattaaaatgattgacaagcatttcctgcaaagtgattggctgcacacatgattgacagttactcctaCCACAATCCAATGTTTCCGTGTCTGCGgcgatacaatacaataaaatactacgtcacattgttttttgtttttgtttaattatgaaaGGTGGAAAGCACATTTATAGCACATCTTAAAGTTGAAttccaaatatatatgcaaaaatatattaaaacataataaaaaatacaagtcaGGAAGCCTGCGCTGTCATTGATTATAAAACATTtggatttgatttgtttctgcCCTGATGCCCCCGGGTCTTTAGTGCTTAGTCTCCAGGACGGGCCTCAGATGGGTGTGTAGCTCATTGAGCAGAGGAGGAAAACATGGGCCGGTTGTACTTTACTGAAAACCAAATAACCCCACCCTAGACACCACTCTcttacagagacagacacaccacacacacacagtcacacaaacaaacacagttactcacacacacacacacacacacacagccactctCTCACACAGTTACTCacagtcactcactcacacacacacacacacacacacacacagttactcacagtcactcacacacatcacacaaacacattcacacacacagtcactctcacacacagtcacacaaacaaacacagttactcacacacacacacacagccactcacagtcactcacacacagttactcacagtcacacacacacacacagccactctCTCACAGTTACTcacagtcactcacacacagttactcacagtcacacacagccaCTCTCTCACAGTTACTCACAGTGACTCACACACAGTTACTCACagtcactctcacacacacacagttactcaCATacagtcactcacacacagtcactctcacacacagtcacacaaacacattcacacacagtcactctctcacacacacagtcacacagtcactCTCTCACAGTTACTcacagtcactcacacacagttaCTCACagtcactctctcacacagtcacacacagttACTCACagtcactctcacacacacagtcactctctctcacagttactcacacagtcactcacacacagttaCTCAGTCACTCACACAGTCACTCTCACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60607 lncRNA downstream 10774 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 17939 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 18697 49725735 ~ 49726249 (-) True G48508
TU60602 lncRNA downstream 21092 49721746 ~ 49723854 (-) False AMCG00014033
TU60588 lncRNA downstream 69196 49663092 ~ 49675750 (-) True G48494
TU60616 lncRNA upstream 1038 49748589 ~ 49749282 (-) True G48517
AMCG00014033 mRNA downstream 20709 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 41573 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 50782 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 64584 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014023 mRNA downstream 137752 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014036 mRNA upstream 2917 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 35721 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014048 mRNA upstream 43792 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 49295 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 66498 49814049 ~ 49818276 (-) True AMCG00014045
TU60605 other downstream 15891 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 23420 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 246316 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 260179 49484500 ~ 49484767 (-) True G48373
TU60181 other downstream 923790 48817983 ~ 48821156 (-) True AMCG00013991
TU60684 other upstream 116773 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 123442 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 123442 49870993 ~ 49918397 (-) True G48570

Expression Profile