RNA id: AMCG00014048


Basic Information

Item Value
RNA id AMCG00014048
length 1068
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00014048
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49791343 ~ 49794766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggctttgaaaatgtttctcctCCTGCTGATGTCCTTGTCTCTGTGTGCCGGCCTCAAAAGGGTGGCTCTCAGCAGACAGCGATCTCAGCGGCACAAGATGAGGGCGAGAGGGACTTTGGCCCAGTTCTGGAACTCTCACCAGCTTGACATGATCCAGTACAGCGATGCCTGCCCCACCGCCACGCAGGCCAGCGAGCCGCTCGTCAATTACATGGATGCAGAGTTTTTTGGGAAGATCTCTATTGGCACACCACCGCAGAACTTCACAGTGATATTTGACACTGGCTCCTCTAACCTGTGGGTCCCCTCTGCCCTGTGTGACAGCCATGCCTGCAAAATCCACAATAGATACCATTCCTCTCAGTCTACAACCTATGAGCTGGATGGCCGTCCTTTCCACATACAGTATGGCACTGGAAGCCTGACTGGCATTCTGGCATATGACCTGGTGATGGTGGAAGGGATGGCTGTGTCCCATCAGAAGTTCGGCGAGAGTGTGAGCGAGCCGGGCAGCACCTTTGTGGATGCTGACTTTGATGGGATCCTGGGTCTTGGATACCCGTCCATTGCAGCAGCGGGCGCCACGCCTGTGTTTGACAGCATGATGGCACAGGGCCTCCTAGACCTGCCCCTCTTCAGTGTTTACCTCAACAGTGTGAAGGTGAACGGGCAGGTCCGGTTCTGTGAGGATGGGTGCCAGGCCATCGTGGACACCGGGACCTCCCTGCTGACAGGACCCACAGCTGACATCAGCGCCCTGCTGGCAGAGCTGGGTGCTGAAGCTGCGGGAGATGGGACGtacacTGTGGCCTGCAGCAGCTTCCCCTCGCTCCCTGATGTCACATTCACCATCGGCGGGGTGGAGTTCCCGCTGACTCCCGCAGCCTACATACAGACAgagGAACTGATGGGAGAGGCAGTGGTGTGTATGGCAGGCTTTCAGGGCATGGATATCCCCCCTCCAGACGGGCCCCTGTGGATCCTGGGAGACGTGTTCATCGGCCAGTTCTACTCCGTGTTTAATAGGGGCAGCAATCAGGTGGGCTTGGCCAAGGCTGTGCCCTGA

Function

GO: NA

KEGG:

id description
K01382 CTSE; cathepsin E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60616 lncRNA downstream 42061 49748589 ~ 49749282 (-) True G48517
TU60612 lncRNA downstream 43792 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 57171 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 64336 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 65094 49725735 ~ 49726249 (-) True G48508
AMCG00014046 mRNA downstream 2597 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014036 mRNA downstream 34102 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014033 mRNA downstream 67106 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 87970 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 97179 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014047 mRNA upstream 2080 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 19283 49814049 ~ 49818276 (-) True AMCG00014045
AMCG00014042 mRNA upstream 25714 49820480 ~ 49831371 (-) True AMCG00014042
AMCG00014043 mRNA upstream 69556 49864322 ~ 49865656 (-) True AMCG00014043
AMCG00014041 mRNA upstream 94520 49889286 ~ 49901963 (-) True AMCG00014041
TU60614 other downstream 43792 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 62288 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 69817 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 292713 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 306576 49484500 ~ 49484767 (-) True G48373
TU60684 other upstream 69558 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 76227 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 76227 49870993 ~ 49918397 (-) True G48570

Expression Profile