RNA id: AMCG00014041


Basic Information

Item Value
RNA id AMCG00014041
length 2497
RNA type mRNA
GC content 0.63
exon number 7
gene id AMCG00014041
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49889286 ~ 49901963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCTCCTCACCTGCCAGGTTGTGCGCAGACGGAGAGCGCAGACAGACGGGGGCTGCAGAGGCTGTGTTTCAGTCTGTGTTTCAGTCACACATTTCACACGGGAGTCCTCTCTTCACACAGCCGCGCACATCCCCAATGGACCGGTACGCGCTGAGAGGCAGCGGCCGCTCGCTGGCGTCTCTCCCGGCCGAGGGCGCCTCGTCCTCGCTGCGGCGGCAGGCGGTGAAGAGGCATCACCACAAGCACAACCTCAAGCACCGCTACGAGTTCCTGGAGACCCTGGGCAAGGGCACCTACGGGAAGGTGAAGAAGGCGGTGGAGAGGTCGGGCAGAGTGGTTGCCATCAAGTCCATTCGGAAGGATAAGATCAAGGACGAGCAGGACCTGATCCACATCCGCCGAGAGATTGAGATCATGTCTTCACTCAACCACCCCCACATCATCACCATCTACGAGGTGTTCGAGAACAAAGACAAGATTGTGATCGTGATGGAGTACGCCAGCCGGGGGGACCTGTATGACCACATCAGCGAGCGCCAGCGGCTGAGCGAGCGAGAGGCACGCCACTTCTTCCGGCAGATCGTCTCGGCTGTCTACTACTGCCACCGGAATGGGATCGTGCACCGGGACCTGAAGCTCGAGAACATTCTCCTGGACGGGAACGGCAATGTGAAGATTGCGGACTTCGGCCTGTCCAACCTGTTCCAGCGAGACGAGTTCCTGGAGACATACTGTGGCAGCCCGCTGTACGCATCCCCAGAGATCGTGAACGGCCGGCCGTACCATGGGCCGGAGGTGGACAGCTGGTCTCTGGGCGTGCTGCTGTACACGCTGGTCCACGGCACCATGCCCTTCGACGGCCAGGACTACAAGAACCTGGTGCAGCAGATCACCAGCGGGGAGTACCGAGAGCCCCCCCGGCCCTCTGATGCCTGTGGCCTGATCCGCTGGATGCTAATGGTGAACCCAGAGCACCGGGCCACGGTGGAGGAGATTGCCGGGCACTGGTGGCTGAACTGGGGCTACCGCCGCCCCCTGGTGCCCGAGAGTGAGGGTGTGCCGGGGTCAGATGCTTCGTCCCCGGGTCCAACGGGCGACTCGCTGGCAGGGGGGCTGGCAGGCATCGCGGAGTGGCTGCGGCGCACGTCACGGCCGCTGTTTGAGAATGGCTCCAAGGTGCGCTGCCTGCTGCGGACACACGGGGCTGCTAGCAGTGGGGGGGCCCTGGTGGTGCGCCAGCGCTCACTGCGGAAGTCACGCAAGGAGAACGACGTGTCACAGATTGTGCAGGAAGGGGCCGGAGCCGCCCGCCAGCCCAAGAGCATCCTGAAGAAGCGCGGCAGCCTGAAGCAGCGGCAGGAGGCGGTACAGAGGGAGCTGGCGAGGCAGGAGGTGGCGGAGCAGGAAGTGGAGGATGTGGAGCTGGGTTTGGACCCACCTGCCCCACCCTCCCAGGCTGCCCCTCGCAAAGGTATCCTGAAGAAACCGCTGCAGAGGGAGTCGGGGTACTATTCCTCGTCACCCGACAACAGTGATTCCACGTCCATGCCCACTCCCTCCATGCCCCTCTCCCCCCCGCAGGGCTCCCTGCACCGCAAGGGCATCCTCAAACGCCACGGCAAGTTCTCCTCTGGGTGTCCGCAGGCGTTCGGCTCGCTGGACCAGCTGGCCGGCGCTGACCGCGAGCAAGACAATGGGGCCCGGGCCCGGCCCAGTGGGGCGGTCAGTGAGGACAGCATCCTCTCCTCTGAGTCCTTCGACCGGCTGGACCTGCCTGACAGAGAGGAGCAGCACTGTGCCAGCGAGAGCCCGGCCGGCATGAGGGGCTGCGTGTCGGTGGACGACCTGCTGGGCCTGGGGGCCAGACCACTGGTGGTGCAGGGCAGCCGGCTGCACCTCTGGGAAATGTGCTGCTACCAGGACCGCTTGGGGGACAGCACCTTCTCACTCAATGATTGCGAGAATGTCACCGAGGTGTACAAGCGTGCCGTGGAGATCTGTGGCCATGCCAGCTGAGAGGCGGCCAGAGGGGCAGTCCAGACTCTTGAGTTTTAACACCAGCGCCTTGCAGTAGTGCTGAAACTCGACTGTCTGTACGAAGGACTCACGGACAGCCTGGACAAGGAGACTGTGGGGAACTTGAGACGGCCTGTGGGCTGAGGGCTCGTCTTGCTCGTTAGTCGATGCTTGAGGTCTCCGTACGGGAGGATCTTCCAGGGTTCTGCTGGAGCCACACAGCTGTGGGAGTGGACATACGAGTCCCTGTGAGTCTCCAGTGTCCGTCAGCAccgtgtatgtttgtttttacacaaactTGTGGTTTGGGGTTTATGTCCAATGGAATGGTCTTCCTCATCAAAGATTCTGCCAAGTGGAAAACCTTCATCTCTCGCCTGCTCCTGTGACCCTCACTTTCCACAGGCTCACGTCATGTGGGGAGCCCTGTCTGTGTGCGACTGGGCCGAGTGGAGTCTCTTCagtggggaggaggggag

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08800 NUAK; NUAK family, SNF1-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60616 lncRNA downstream 140004 49748589 ~ 49749282 (-) True G48517
TU60612 lncRNA downstream 141735 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 155114 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 162279 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 163037 49725735 ~ 49726249 (-) True G48508
AMCG00014043 mRNA downstream 23630 49864322 ~ 49865656 (-) True AMCG00014043
AMCG00014042 mRNA downstream 57915 49820480 ~ 49831371 (-) True AMCG00014042
AMCG00014045 mRNA downstream 71010 49814049 ~ 49818276 (-) True AMCG00014045
AMCG00014047 mRNA downstream 84685 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014048 mRNA downstream 94520 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014044 mRNA upstream 29197 49931160 ~ 49934490 (-) True AMCG00014044
TU60685 other downstream 15911 49870993 ~ 49873375 (-) False G48570
TU60614 other downstream 141735 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 160231 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 167760 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 390656 49494727 ~ 49498630 (-) True G48392

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00453106_00464818.mRNA True 2973 mRNA 0.51 7 CI01000186 452092 ~ 464818 (-)