AMCG00014754 (mgat4a)


Basic Information

Item Value
gene id AMCG00014754
gene name mgat4a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29787726 ~ 29829991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014754
AAGCTGGTCGCCTACCAGCGAGAGTTCCATGCCTTAAAAGAGCGCCTCCGTGTGGCGGAGCAGCGCACCCTGCAGCGCTCGTCAGAGCTTAACACCATCCTGGAGCAGTTCCGCCGTGCCATCACCGAGACCAACGGCAGCAAGGATGCCCTCAGCAACTTCTCAGATGAGACGCAGAAGCTGCTGAAGGAGCTGACCCATAGGAAACCTCTTCAAGTGCCAAATATCTACTACCACCTGCCTCACCTGCTCAACAATGAAGAGAGCCTGCAGCCAGCTGTCCGGGTGGGCCTGGGGAGGACCGGAGTGTCTATTGTCATGGGCATCCCGACGGTGAAGAGGAAAGTCAAGTCCTATCTGGCGGAGACGCTGCACTCCCTAATCGACAAGCTGTCAGACGAGGAGAAGCTGGACTGCGTGATCATAGTCTTTATTGGAGAGaCAGATCTGGATTATGTCCATACCATGGTGGATAGCTTGGAAAAAGAGTTCTCCACAGAAATCAACTCGGGCCTGCTGGAAGTGATTTCTCCTCCTGCCAGCTACTACCCTGACCTCTCCAGCCTGAAGGAGACTTTCGGTGACTCGAAGGAACGGGTCAAGTGGCGGACAAAGCAGAATTTGGACTACTCATTCCTGATGATGTATGCTTTGAATAAAGGGGTTTATTATGTCCAGCTTGAAGACGACATTGTTGCCAAACCAAACTATTTCGCCACCATGAAAAACTTTGCTCTCCAGCTCTCCTCTGAAGACTGGATGATTCTGGAATTCTCCCAGTTGGGTTTCATCGGAAAGATGTTCCAGGCTCCGGACCTGAACCTAATTGTGgagttcatcttcatgttctaCAAGGAGAAACCTATTGACTGGCTGCTGGATCATATCCTGTGGGTGAAGGTGTGCAATCCTGAGAAGGATGCGAAACACTGCGAGAGGCAGAAGTCCAGCCTGCGAGTGCGGTTCAGGCCCTCTCTCTTTCAACATGTGGGCCTGCATTCCTCTCTGGCCGGAAAGATCCAGAAACTTACTGACAAGGACTTCCTCAAGCCATTGCTCCACAAAATTCACGTGAACCCTCCAGCGGAGGTCTCCACCTCTCTAAAAGTTTACCAAGGCCACACTCTGGAGAAAACCTATATGGGCGAGGACTTCTTCTGGGCTGTTACCCCCACGGCAGGAGACTACATCCTGTTCAAGTTCGACAGGCCTGTCAATATAGAGAGCAGTCCTGGGGTACAGTGCAACAGTAATGGGGAAATGCTGAGGATCTGTGAACGGATTGAGAAGAGAACACAGGGAAACCATGCGGCCTGCAGACAGGgcgatttgtttttaaatgtaaaggtgCAGTTAAATCTGTGGAACAGGTACCTATTCCGCAGTGGAAACCCAGAGCATCCGGGAGACAAGATCCAGAACACCACAGTGGAGATACTACCGTTCTCGGAAGCTGGACTGGAAACCAAAGAGAAGTCCAAACGGACTGAAGATCGCTTTTACAGAATAGgGCGCTTTGAGAACGGGGTGGCGGAGGCGGCAGTTGACCCCAGCTTTAACCCGGTGGCGGCTCTGCGCCTGACTGTGCAGCAGGACTCAGCCGTGTGGGCCATCCTCAGCGAGATCCACATTAAAAGAGTGTCCAGC

Function

symbol description
mgat4a Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi stack; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human MGAT4A (alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A).

NR:

description
PREDICTED: alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00738 MGAT4A_B; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014754 True 1647 mRNA 0.52 16 29787726 29829991

Neighbor

gene id symbol gene type direction distance location
AMCG00014751 NA coding upstream 48083 29735891 ~ 29739643 (+)
AMCG00014752 NA coding upstream 54104 29708405 ~ 29733622 (+)
AMCG00014753 NA coding upstream 103067 29659544 ~ 29684659 (+)
AMCG00014747 NA coding upstream 130637 29653193 ~ 29657089 (+)
AMCG00014745 txndc9,LOC107568936,LOC107668903,LOC106586783 coding upstream 137916 29643776 ~ 29649810 (+)
AMCG00014761 olig3 coding downstream 263421 30093412 ~ 30094212 (+)
AMCG00014760 NA coding downstream 269995 30099986 ~ 30142954 (+)
AMCG00014778 NA coding downstream 331987 30161978 ~ 30172006 (+)
AMCG00014773 NA coding downstream 345076 30175067 ~ 30182397 (+)
AMCG00014776 NA coding downstream 367772 30197763 ~ 30211831 (+)
G72426 NA non-coding upstream 595448 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 627301 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 650373 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 796427 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 802150 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 1006845 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1011569 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1016171 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1125914 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1173381 31003372 ~ 31003788 (+)
AMCG00014738 NA other upstream 508577 29268329 ~ 29279149 (+)
AMCG00014739 NA other upstream 531372 29247875 ~ 29256354 (+)
AMCG00014729 NA other upstream 949816 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 1483653 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1907926 27868703 ~ 27879800 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 13476 29843467 ~ 29846586 (+)
G72605 NA other downstream 21459 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 934360 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1148225 30978216 ~ 30978825 (+)
G72786 NA other downstream 1149579 30979570 ~ 30980252 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037622 mgat4a coding NC_007120.7 CM002893.2 7091028 ~ 7213772 (-)