AMCG00014808 (LOC107579096)


Basic Information

Item Value
gene id AMCG00014808
gene name LOC107579096
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31896940 ~ 31915838 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014808
GAATCATTCGGAATGTTTCGGAAAATACGGAAGCGCGTCGGATATTTTCGTCTCTGAATATGGTTATGGCCGGCGTGTCCGGAGTGTGTCATACCCGCCTGAGCGCGGGAAACTCAGCTGTTTAGAACTTCAGCAGAACAGAAAAGGAAGCAAAACGGAATCTGGAATCTGCTAAACAGGTGATCCAGAAATGAAGGTTGTCACTTGTGAGATAGCGTGGCATAACAAGGAACCAGTGTATAGCATCGACTTCCAGCATGGAGGAGATGGAAAGATCCATAGACTGGCTACAGCAGGAGTAGACACCACTGTTCGGTTGTGGAAAGTGGAAAAGGGGCCAGACGGAAAGGCCGTTGTGGAGTTCTTGTCCAACTTGGCACGGCACACGAAGGCAGTCAACGTGCTAAACGACAGCAAAGAGCCAGAACAGGCTGGATTTCAGGAGGACGAGGATGCTCAGCTCAACAAGGAATGCTGGACTGTGGTTAAAACACTTCGTGGACACATAGAAGATGTCTATGACATCTCTTGGACCACGGATGGAAACTTCATGGTGTCTGGATCAGTGGACAACACTGCTATCATGTGGGACATTAATAAAGGACAGAAGATTTCCATTTTCAATGACCACAAGAGCTATGTACAGGGAGTGAGCTGGGACCCTTTGGGCCAGTACATTACTACCCTCAGCTGTGACAGGGTGATGAGAGTGTACAGCACGCAAACAAGGAAAAAGACCTACATTGTGAAGAATTACAGAATGTTTCATGATGACAGTATGAGGTCTTTCTTCCGTCGCCTCACGTTCACACCAGATGGGTCTTTGCTGCTTGCTCCAGCCGGTTGCGTCGAAGCTGGAGAAAATGTCACCAACACAACTTATGTTTTCTCAAGAAAAAACCTGAAAAGACCCATAGCACATCTCCCATGCCCAGCAAAAGCCACTCTAGCAGTGCGGTGCTGTCCAGTCTACTTTGAACTGCGGAACTCAAAAAGCGAAGATGGGTCCACCCTGGAGCTGCCGAATGTGTTCAAGCTGCCCTACCGGTTAGTGTTTGCTGTTGCCTCTGAAGACTCTCTGTTCCTGTATGATACCCAGCAGACCATCCCTTTTGGGTCCAAGGATGGCTCATTCCTGGCCGTGTCCTCGACAGATGGCTACTGTTCCTTCGTGACATTCGAGGCTGGCGAGCTGGGCACTCCCCTGAAGGAGAAGCCCACACTGGAGGTGCAGACCCCGGGGCCGGCAGCGGAGAAGAAGCTGAAAAAGGCAGCTAGGACAGCCTCCCCTGTACCCAGGCCAGTGGAAGCCAGCCCGGGGGCGAGCAAGAACGGGGAAGGCAGCAGCCCCAGCCCCCTTGTGGAGAGGTCGTCCTCTAACAACAGGCCCGGCCGAGAGAGTCCCTCCACTCCTCTCAGCTCCAGGGGCGTTTGTGTCACCCCCATCTCTGAGGACAAAAAGCCTCTGCATTCTGCTGGCCAGCCCAGAAGGATCACACTAAACACTCTCGAAGCCTGGAGCAAACCCAGCACCCCGATTGGCCCCACCCCCAGGCGGGTGGTTCTGACTCCTGTAGCAAGTGGATCACCTGTGTCATCCAAATCTTTGATTGCTACTTCGCCTTCTACAGAAAAAGCTAAGCACGAGAGACCGTCCCCTCCTACAGACCCAGTGTGCCAACCCCCTGAACCAAAGAGGCCCAAAACTGAGAGGATGCTGGTGTCTGGCACCCCACTCTGCTCAGAGCCCAGCACAGAGGAGCCCCAGCACATAAAAGCCCTGAACCCATGATCCTCCTCAcagcacacagactgacactgcGTCTACATGGGGACTCTCTCAATgcatataacaaaaaaaacacagggtCTTGAAACTTGCTTAATGTTGACTTAAAACCTTCTCTCTAAATGATTCCACCTCCCATGCTGCCTCTTCAACAGGGTTGtactaattaatgtattttgctattatttttggaaatttgcatttgtatattaCTTGATAtatttggaaccatttttttccaattgtaGTCctgcagtgttgttgtttttccaactGGTTAGGTAAGTTGTTCAAAGTCCTTTCAGTCACTTTCAGAGATGACATTTGTAGCTTTTATGTATACcataaaggaaaaatgaaaagatggtgattttaaattaaaattccaCAGACCTGTTTAAATGCAGTGGTATCTTTATCCTTTTCTAGTGTGCATTTTGTACTATTTCCCTCTTTAACAGTTTCtataaattgagaaaatgcACCTATAGAATCAAATCTGTCAATTGCCAGGATATATGAGAGGggtaataattttaaaaaacaaaatccttcaaTTAGTTCTTGATATCCCCTGCTTTTAAAGGGAATTATGGTGCAAACTTTTGGGAAATTAACATCGCCTTGAATTTGATTTAAGTGCTTGTCATGTGCTATATGCAGAGTTTAATACAGTACAAGTTTAACACTTAAGGAAAATACTGAAGAATGTCCATATTACATCTTTCTGATTTTAGTGCAAAAGAAAATAGGCTTTTCAATGTATGGtcatatacaaaaaacaatgaattggGTATTCTGCAGATAGTTCCATTAATGATTAGTCTCTAATACGTCAGCAACagtaaatctaaataaaacttattcttacaaatatttaagtatCCTGTTTACATTTGTAAGACTGAGAATTCTCTTCAACAAaggttttatatgtttttatatgtgccAGGGATCAGCTTAATGATTGCTTGAACTGAGACAGTTATTGTGTGTTGTAGAATTAAATGAAGTATTGATTTCAGGGATCAGATAAAGCTGCCCACCTCAATTTCATAACACAGTAATTAAGCTAGTCTTCAGTATATCAATCAGGTCATggactttaaaatgcaaaccaatGGTGTTTCTGATGAAAAACAGCTGTTACTTTAATGAAGACTTGTTCTGAAGACTGTTCTGATCACTGTGGGGAAAATGTAAACTTGAATATTGCACCTTTATGCGTTGTATACTTTGACAGTATCAATAATAAAGTAGTGCATTTTAAGCTTTATTGACACAAGCATGGGAATTTATAGAGTGGGCATATAATTTTTTCTTTATCTAATCAGTGTTCATTCCTTTATGACCATTTGTGCAGAGTGGAGTGTCTACAGTGACACCTGTAggataatacattaattgctGCTCAAATAAATGAGGTGAGATAAATGCAATACCCTACATATTGGATAGCCTGGCTTTGAAAAGATGGTGAATttccaaaatacatttctaaacatttttttgacaCCCATTATTTCTCTTTCAGTGTTATTCTTTTCAATCTAGGATGTTCAGACAGATATGATGTCATAATCCATAAAGTGGTA

Function

NR:

description
PREDICTED: chromatin assembly factor 1 subunit B-like, partial

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014808 True 3384 mRNA 0.43 14 31896940 31915838

Neighbor

gene id symbol gene type direction distance location
AMCG00014807 NA coding upstream 6492 31865131 ~ 31890448 (+)
AMCG00014802 NA coding upstream 71626 31802930 ~ 31825314 (+)
AMCG00014803 NA coding upstream 127279 31766064 ~ 31769661 (+)
AMCG00014805 NA coding upstream 131902 31764180 ~ 31765038 (+)
AMCG00014804 NA coding upstream 133105 31753276 ~ 31763835 (+)
AMCG00014810 NA coding downstream 97346 32013184 ~ 32014391 (+)
AMCG00014812 NA coding downstream 327116 32242954 ~ 32255291 (+)
AMCG00014815 gja8,LOC107746070,LOC107566528,LOC107566539,LOC107603011,LOC107746288,LOC107676899 coding downstream 480849 32396687 ~ 32397508 (+)
AMCG00014817 taf6 coding downstream 737905 32653743 ~ 32663154 (+)
AMCG00014821 LOC107738524 coding downstream 819030 32734868 ~ 32756137 (+)
G72926 NA non-coding upstream 150040 31745523 ~ 31746900 (+)
G72912 NA non-coding upstream 193367 31703146 ~ 31703573 (+)
G72911 NA non-coding upstream 194505 31702162 ~ 31702435 (+)
G72875 LOC103376870 non-coding upstream 304835 31524315 ~ 31592105 (+)
G72861 NA non-coding upstream 433129 31462146 ~ 31463811 (+)
G73017 NA non-coding downstream 50084 31965922 ~ 31966189 (+)
G73018 NA non-coding downstream 51518 31967356 ~ 31969205 (+)
G73019 NA non-coding downstream 56147 31971985 ~ 31995538 (+)
G73045 NA non-coding downstream 340171 32256009 ~ 32256776 (+)
G73105 NA non-coding downstream 642443 32558281 ~ 32564339 (+)
AMCG00014799 NA other upstream 98477 31790901 ~ 31798463 (+)
G72925 NA other upstream 142010 31717118 ~ 31754930 (+)
AMCG00014793 NA other upstream 373753 31512808 ~ 31523187 (+)
AMCG00014786 nhlh2,LOC106574539,LOC107739819,LOC105019883 other upstream 749063 31143423 ~ 31147877 (+)
G72787 NA other upstream 900577 30990063 ~ 30996363 (+)
AMCG00014811 NA other downstream 23715 31939553 ~ 31962971 (+)
G73103 NA other downstream 626672 32542510 ~ 32561489 (+)
G73244 NA other downstream 1448917 33364755 ~ 33366100 (+)
G73292 LOC100846954 other downstream 2323096 34238934 ~ 34239400 (+)
G73329 NA other downstream 2864284 34780122 ~ 34780590 (+)

Expression


Co-expression Network