AMCG00014817 (taf6)


Basic Information

Item Value
gene id AMCG00014817
gene name taf6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32653743 ~ 32663154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014817
GCGGATTTTCAGAAAAAAGGGTCGGAGCTCGAGGtgtaataacaataactaaaataaataaaaaataaatacatgcacgaACACAAGCTGACGTTGGAGTCACCTTGGCGTTCGCCACAcgttgtgtttttccttttgtcgTAACGACGAGAGATGGCGGAGGAGCGGAAGCAGAAGGGCAGCATCACGGTGCTGCCCACTGAGTCCATGAAGGCCATGGCGGAGTCGGTGGGTGTGGGGCAGCTGCAGGAGGAGTCCTGCCTGGCGCTGAGCGAGGAGGTCAGCTACCGCATCAAGGAGATCGCACAGccGCTGTATGGGTTCCAGTCTCAGGAGTTCATCCCGTTTCGCTTCGCCAGCGGGGGGGGCCGTGAGCTACACTTCTACGAGGAGAAGGAAGTGGACCTGAGGAAGGAGAAGTGCCGTCTGAAGCCGCGCAGCACCCACGAGCTCTCAGTGGAGCAGCAGCTCTACTACAAGGAGATCACAGAGGCCTGCGTAGGCTCCTGCGAGGCCAAGAGAGCGGAGGCTCTCCAGAGTATCGCCACAGACCCTGGCCTGTACCAGATGCTGCCCCGATTCAGCACCTTCATCTCTGAGGGGGTGCGTGTCAACGTTGTCCAGAATAACCTGGCCCTCCTCATTTACCTGATGCGGATGGTCAAAGCTCTGATGGACAACCCCACTCTGTACCTGGAGAAATATCTCCATGAGTTGATCCCGGCGGTGGTGACCTGTATTGTCAGTAAGCAGCTGTGTCTGCGCCCAGACGTCGACAACCACTGGGCCCTGCGGGACTTTGCCGCACGCCTCATGGCCCAGAGCTGCAAGACCTTcagcaccaccaccaacaaTATCCAGTCCAGGATCACCAAGACCTTCACCAAGagCTGGCTGGATGAGAAGACTCAGTGGACGACGCGGTACGGCTGCATTGCTGGGCTAGCTGAGCTGGGACCTGACGTGATAAAGACCCTGATCTTGCCCAGGCTGCCAGTGGAGGGGCTGCGGATCAAGGCGGTGATGGAGGGCCCGGTGGTCAGCAACATCGACAAGATCGGTGCCGAGCACGTTCAGAGCCTGCTGCTGAAACACTGCGCCAGTGTGATAGCGAAGATGCGCTCCCCCCCGGACGTGGCCGAGCATTATCGAGTGGAGTTCGGCGTCCTGGGCCCGTTGCTCTGCTCCCACGTGGTCAAGGCCCGCACGCAGGCCGCCATGCAGGCCCAGCAGGTCAACCGCACCACGCTGACCATCACCCAGccACGGCCAACCCTCACGCTGTCTCAGAGTGGCTCGGGGGGTGGTCTGTCTCGCCCCCCCAGTATAATCAAGGTGCCCAGCTCCCTGACGCTGCCCATGCAGACCCTGATCCTGCAGCCGCTGGTCAAGCTGGAGTCGGGGGGTGGTGCGGGGGCTGGGGGTGGGTCCCGGACCGTCCAGAAATACATCGTGGTCTCGCTcccctcctcgtcctcctccacTGACAGCAAGGGCCCCAACGTTGGCCTGACcgccctctccccctcctctgccGCTGCCCCCCTCCCTGctacttcctcctcctcctcgggcGTCCCCCCACCCCTAGAGCCCAGCGTCAAACTGGAGCGGCCGGAGTCCCCTGGAATCAGCACGCACTCCCCCCACTGA

Function

symbol description
taf6 Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF6 (TATA-box binding protein associated factor 6).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 6

GO: NA

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014817 True 1653 mRNA 0.61 12 32653743 32663154

Neighbor

gene id symbol gene type direction distance location
AMCG00014815 gja8,LOC107746070,LOC107566528,LOC107566539,LOC107603011,LOC107746288,LOC107676899 coding upstream 256235 32396687 ~ 32397508 (+)
AMCG00014812 NA coding upstream 398452 32242954 ~ 32255291 (+)
AMCG00014810 NA coding upstream 639352 32013184 ~ 32014391 (+)
AMCG00014808 LOC107579096 coding upstream 737905 31896940 ~ 31915838 (+)
AMCG00014807 NA coding upstream 763295 31865131 ~ 31890448 (+)
AMCG00014821 LOC107738524 coding downstream 71714 32734868 ~ 32756137 (+)
AMCG00014822 NA coding downstream 95811 32758965 ~ 32768979 (+)
AMCG00014827 NA coding downstream 1034369 33697523 ~ 33778248 (+)
AMCG00014831 NA coding downstream 2027931 34691085 ~ 34931860 (+)
AMCG00014833 NA coding downstream 2364703 35027857 ~ 35320982 (+)
G73120 NA non-coding upstream 77864 32575447 ~ 32575879 (+)
G73104 NA non-coding upstream 86847 32565793 ~ 32566896 (+)
G73105 NA non-coding upstream 89404 32558281 ~ 32564339 (+)
G73045 NA non-coding upstream 396967 32256009 ~ 32256776 (+)
G73019 NA non-coding upstream 658205 31971985 ~ 31995538 (+)
G73158 NA non-coding downstream 9357 32672511 ~ 32681805 (+)
G73212 NA non-coding downstream 141514 32804668 ~ 32806309 (+)
G73220 NA non-coding downstream 406849 33070003 ~ 33070214 (+)
G73247 LOC100846954 non-coding downstream 792457 33455611 ~ 33645483 (+)
G73257 NA non-coding downstream 982770 33645924 ~ 33725262 (+)
G73103 NA other upstream 92254 32542510 ~ 32561489 (+)
AMCG00014811 NA other upstream 690772 31939553 ~ 31962971 (+)
AMCG00014799 NA other upstream 855280 31790901 ~ 31798463 (+)
G72925 NA other upstream 898813 31717118 ~ 31754930 (+)
AMCG00014793 NA other upstream 1130556 31512808 ~ 31523187 (+)
G73244 NA other downstream 701601 33364755 ~ 33366100 (+)
G73292 LOC100846954 other downstream 1575780 34238934 ~ 34239400 (+)
G73329 NA other downstream 2116968 34780122 ~ 34780590 (+)
G73343 NA other downstream 2278857 34942011 ~ 34960447 (+)
AMCG00014836 NA other downstream 2727480 35390634 ~ 35412587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000081_01536670_01610329 TAF6 coding CI01000081 null 1536670 ~ 1610329 (+)