CI01000081_01536670_01610329 (TAF6)


Basic Information

Item Value
gene id CI01000081_01536670_01610329
gene name TAF6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000081
NCBI id null
chromosome length 1644768
location 1536670 ~ 1610329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000081_01536670_01610329.mRNA
ATGGCAGAGGAACGCAGACAGAAGCTGTGTTCAGTGATCCTCCCTACTGAATCCATGAAGGCGATGGCGGAGTCAGTGGGTGTGGGCTCACTGCAGGAAGACAGCTGTCTGGCCCTCAGCGAAGAGGTTAGCTACAGGATTAAAGAGATTGCACAGGATGCACTAAAGTTTATGCACCATGGGAAAAGACGCAAACTTACGACTGGTGACATTGACCATGCTCTTAAACTAAAAAACGTGGAGCCACTGTATGGATTCCAGTCTCAAGAGTTCATCCCGTTTCGTTTTGCAAGTGGAGGCGGCAGAGAATTGCACTTTTATGAAGAAAAGGAAGTGGATCTTAGTGACATCATTAACACGCCCCTCCCTCGAGTTCCTCTTGATGTTTCACTCAAAGCTCATTGGTTAAGCATTGATGGTGTCCAGCCTGCAATACCAGAGAACCCACCTCCAGCCCCTAAAGAGCAGCAGAAGGCAGAGTCTACAGAGCCACTCAAAGCTGTCAAACCTGGACAGGAAGAGGAAGGCTCTATCCAGTCTAAGGGTCAGGGTGCAACCTCTGCTGAAGTCAAAGGAAAGGAGAAGATGCGGATGAAGCCGCGTAGCACACACGAGCTCTCTGTGGAACAGCAACTGTACTATAAAGAGATCACTGAAGCTTGTGTGGGATCTTGTGAAGCCAAAAGAGCGGAGGCACTGCAGAGCATAGCAACAGACCCAGGGCTGTACCAGATGCTGCCAAGGTTTAGTACCTTCATCTCTGAGGGCGTGCGTGTAAATGTTGTTCAGAATAACCTGGCTTTGCTGATATACTTGATGAGGATGGTGAAGGCTTTAATGGACAATCCCACACTATATTTAGAGAAATATCTCCATGAGTTGATCCCGGCAGTGGTGACGTGTATTGTCAGTAAGCAGTTATGTTTAAGGCCTGACGTGGACAATCACTGGGCTTTGCGAGACTTTGCTGCTCGGCTGATGGCTCAGAGCTGCAAGACATTCAGCACAACCACCAACAACATCCAGTCACGTATCACAAAGACCTTTACTAAGGCATTGTTGGATGATAGGACTCAGTGGACAACTCGTTATGGCTGCATTGCTGGACTTGCTGAACTTGGGCATGACGTGATAAAGACATTGATCATCCCTCGCCTGTCTGTAGAGGGTGCTCGTATTAAAGCTGTAATGGATGGGCCAGTGGTATCCAACATTGATAAGATTGGAGCTGATCATGTCCAGAGTCTTTTACTTAAACATTGTGCAAGTGTGGTTGCTAAAACTAGGCCGCTACCAGATTTGGTGGATCAATACAAGACAGATTATGGTTATCTGGGCACCATGCTCTGTTCGCATGTGATCAAGGCTCGTGCACAGGCTTCCTTCCAGGCCCAAACTGTTAACAGAACCACACTCACTATCACACAGCCACGTCCAACTCTGTCAATGTCTCAGAGTGGATTGTCAGCGTCAGGTGGTTCACGCACACCCAGCATCATTAAAGTACCCAGTTCCCTCACCCTCATGTCCACTCGCCCTGGAACGCCCACTCAGCCGTCACCCCCAGCAACCAAGTATATTGTTATGGCAACAAGTGCAGGGGCTGCATCCACACAGCAGGTAATCACTCTCAGCTCCTCCCAGTCTGGATCTCCTGTCACAAGTACAGTCCCCAGCACCCCCACATCTTTACAACCACTCGTTAAACTGGAGTCTGGAAACACAGGTGCTGTGGGTGGCTCACGCCCTCTCCAGAAATACATTGTGGTGTCTTTGCCTTCATCCTCTTCCTCACTGGAGAACAAGGGCTCAAGTGTCCTTCCCTCCTCTACCTCACCCATCAGCATGGAGTCTACTGTCAAGCTAGAACGTTCAGAATCACCTGCCGCAAACACACAATCGCCACAC

Function

symbol description
taf6 Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF6 (TATA-box binding protein associated factor 6).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000081_01536670_01610329.mRNA True 1908 mRNA 0.49 14 1536670 1610329

Neighbor

gene id symbol gene type direction distance location
CI01000081_01401235_01401648 NA coding upstream 135016 1401073 ~ 1401654 (+)
CI01000081_01241322_01259737 NA coding upstream 275400 1241322 ~ 1261270 (+)
CI01000081_01137104_01147739 NA coding upstream 388904 1137104 ~ 1147766 (+)
CI01000081_01120653_01123960 NA coding upstream 412021 1120603 ~ 1124649 (+)
CI01000081_01057614_01058675 NA coding upstream 477802 1056300 ~ 1058868 (+)
CI01000081_01612060_01612809 NA coding downstream 1731 1612060 ~ 1613912 (+)
G294106 NA non-coding upstream 9805 1526058 ~ 1526865 (+)
G294097 NA non-coding upstream 18984 1516151 ~ 1517686 (+)
G294095 NA non-coding upstream 22713 1513568 ~ 1513957 (+)
G294094 NA non-coding upstream 25291 1509538 ~ 1511379 (+)
G294091 NA non-coding upstream 29466 1506992 ~ 1507204 (+)
G294116 NA non-coding downstream 10426 1620755 ~ 1621041 (+)
G294117 NA non-coding downstream 11378 1621707 ~ 1622120 (+)
G293747 NA other upstream 791155 737051 ~ 745515 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014817 taf6 coding CM030128.1 CM030128.1 32653743 ~ 32663154 (+)