G294106


Basic Information

Item Value
gene id G294106
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000081
NCBI id null
chromosome length 1644768
location 1526058 ~ 1526865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU333849
ACCAGGGTGTCCGCGGGGTCTTAAAAAGTATTACATTTTGTATAATCTTCATTATGTATATTTGTCCAAAGAGGTTGTATGCTAAAGTTTACCTGAATTTAATCATTGCGTAGGCGAATAGTGTGATTCTGTGTAGTTTATTTATAGAATCCCGCTAGATTTGATGTCATCTGTTACCGCGCTCACTGACTGACTGATAGCACAGGTCCGTTCACGCTCGGTTGTTAAGCAACATCGTTGACTAATGGGAAAATAGAAGTTTTCGTGCAAATGGTTGGAGGATAAGGAGTTGGAACTAGGGGTGTAACGGTTCTCAGTAAAAAAAAAATCCAACCGTGCCGTTCTCCACACACGTTTCGGCACACACTTGCACCTCGGTTCATCTCATATCTGACAACGCATACGCATCTATAATATGGTTTGTTGAAAATAAATAAAACCGACAGAGTTAGGCTAATGTATGTTTCTGTCGATGGATACGCATTCTGGCTTCCCCTAAACTTTGTTCAATGCGAGTGCTGTATGCTCTATATGAGCAGTCATTTACGCCGTCATCATCCGAGTGTTGATAGCGCGCGAGCACAGGTGAGACCTGAACAGAACACATTGCTGTCTGCCTTTAAACTAAACTCATTTAAGCCTGGCTAATTTAAACATTCGAGCGCAAGGCGTGAAAGAGAACTTACACGCGCGCTGTGAGAAGATTTGTGCACTCATCCGAAGCGCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU333849 True 728 lncRNA 0.43 2 1526058 1526865

Neighbor

gene id symbol gene type direction distance location
CI01000081_01401235_01401648 NA coding upstream 124404 1401073 ~ 1401654 (+)
CI01000081_01241322_01259737 NA coding upstream 264788 1241322 ~ 1261270 (+)
CI01000081_01137104_01147739 NA coding upstream 378292 1137104 ~ 1147766 (+)
CI01000081_01120653_01123960 NA coding upstream 401409 1120603 ~ 1124649 (+)
CI01000081_01057614_01058675 NA coding upstream 467190 1056300 ~ 1058868 (+)
CI01000081_01536670_01610329 TAF6 coding downstream 9805 1536670 ~ 1610329 (+)
CI01000081_01612060_01612809 NA coding downstream 85195 1612060 ~ 1613912 (+)
G294097 NA non-coding upstream 8372 1516151 ~ 1517686 (+)
G294095 NA non-coding upstream 12101 1513568 ~ 1513957 (+)
G294094 NA non-coding upstream 14679 1509538 ~ 1511379 (+)
G294091 NA non-coding upstream 18854 1506992 ~ 1507204 (+)
G294090 NA non-coding upstream 19161 1506409 ~ 1506897 (+)
G294116 NA non-coding downstream 93890 1620755 ~ 1621041 (+)
G294117 NA non-coding downstream 94842 1621707 ~ 1622120 (+)
G293747 NA other upstream 780543 737051 ~ 745515 (+)

Expression


Co-expression Network