CI01000081_01241322_01259737


Basic Information

Item Value
gene id CI01000081_01241322_01259737
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000081
NCBI id null
chromosome length 1644768
location 1241322 ~ 1261270 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000081_01241322_01259737.mRNA
GAGTGTATTTCAGACTACCATGAAGTCCTGCTCTCTGGCAAGATGAATGTAACAACAGAAGTTATTCCAGGAACAAGAGGTCTGAGACCAGTGCTGAGCCCTGACTGCTGGCCCATGTTTACAGAGATGGTGGTTCTGGAGAAAGTGTGTGGAGAAGATCATGTGTGTATATCAGATTTAAATGTGTCTCTGTCTTTTATGAGTGATATTGTAGTGAGCACTGTAGGTTACCAAGTAAATCTCTCAGTGGAGGTGTCCAATAGCGGAGAAGATTCCACGGACACAGAGCTTTTCCTTCATCATCCTACCTCCCTGTCCTTCACCCACATCAAAACGTCTGGTGGACAGGCGTGGTGTGAGTCCAATCACACAGAGCATTCAAGCATCACACGCACAGCATGCAAGCTTGGTGCAACAGTATTCCGTCAGAGAGCAAAGCTCCAAATTCTGTTTGATCTTGCATTAGTCTCTTGCCCTTACTCTCACCACAAGTGTGCCAAAATGTTGCAGATTGCTCAGCCTAACTGCCCAGATGGCAGACCAAAGGACTGGCAAGGTGTCAGCCAAAAGCAACTAGACAACAATGGAAGAGAACTAAAGGCAGATGACTCAAACCAGAGGTATGATCACAAAGATCTGACTAAAGTCAACTTCTTCCTGGCCCACAACCTCACTGGTTTGAAACAGGAGGTGAACAACCTCAAACTCCAGATCACAGAGACTCGCAAGGAGCTGACGCATACTAAAAGCCACATAGACCAGCTAGAGATGGAGGCTCAGGACAGACACAAGGACCCTGACAGAATAGAGACACAGAAGAAAATCCACAAACCTCAAAAGGCTCTGACAGCTGCTCAGCAACGAGAGCAGCTGGAAAAGGCAGCCAGAGAGGACCTGGAAAAAGAGCTCTTTCACAAAGAGTCACTGTTAAAAACAGCAAATTCTGAACTCTTGGACAAAGACACCAGAATCAGGGCCTGTGAACATCACCTGGATGTGTCCAGATCTGGGACTGAAGCTCTGACCCAGCAGCTGGACAACACCAAAGATGAACTTGACATGGCCCAAAGAGAACTGAGACACTCTTACCTGCAGCAGAAAGAACCACAGCAGGAGAAACGTCTCACTCCCCCACATAGAATAAGCAGAAGAACCTCCCCCAGCCAAGCCAAAGGGGGGAGTCAAAGCCTTCTGCTTGACACCTTATCAGCCAATTTCCTGAAATCCTCTGCAGCTACAGAAGGAGAAGGATTAATGCAGACAGACCCAAGTACCAGACCTACCACAGGGAGAAGCCATGGATGGGAGCATCCTCTTCCTGCAGACACAGCAGGATCTCCAACAGCAGGCAGCACAAGAACAACTGGACATGCCTGCATCGGACCTGCAGGAGCTTCTAACGCTACACCAGAGCCTCTACAAGTGTACTCATACCATCTGTCCCGTGCGGAGCGTCAATGGCGAATCCAGAACCATCTGTGCCTTTATTGTGGGTCTGACAGACATCTCATCCCTAGATGTCCCCTCTGTCCTCCATGTCAAGTGAAAGACCTGTTCACACAAACTGGATATCCACACAATCCTAGGTACACCGCTGGGCTGTGGCAGTATAGAGTCACCTTTGTCCACCACGGATATCATGCTCAACTCCACTACCATCGAGAGTCCTGAGTCAACCATGAAGACCGAGATTCCTTGCCAATACCAGGCTTTCCAAGATGTGTTCAGAAAGCAGTTGGCAACGGAATTACCACCTCATCAGCCATGGGACTCCGCCATCGACCTGCTGCCTGGGGCTACATTACCTAAAGGTAAAATTTACACTTTGTCCATTGTCAGAGCAGAAGGCCATGGAGGAATACACCGCAGAGGCACTCAAGCAAAAGTTTATCCATCCATCTACTTCCCCTGCCACTTCCAGTTTTTTTTCGTTGGCAAGAAGGATGGAGGGTTGAGGCCGTGCACTGAATATCGCACTCTGGATGCTCAAACTATCAAGTTCCGCTACCCACTTTCTCTAGTCCCATCCTCTCTAGAACAGTTGCGGGGAGCTCAGATCTTCACCAAGCTTGATCTGCGAAATGCTAACAACCTCGTCAGAATACAAAGATGAACCTTGACTAATTGGGGTCTAGATCAGGAAGTAGACAGACTGGCTAAACCGACCATCTACTAGCTGTCTCACCATCATTCAACCATCTTTGAAGAAAACAAACACAACCCTAGGTATTTATTTGATACAGTGACTAAATTAACGAGAATTAAAGCTTCAACCCCAGACATTTCCAAACAGCAAAGCAGTAATGACTTTATGAACTTCTTTACTTACAAGATTGATAATATTAGAGAGAAAATTATAACTGCAACCGTAAACTACAGTATCACATCAGACAGTGCATTGTAGTGTCCCTGAGGAAAAAGGGCTACCCACTGCATTAGAGACTGCTGAAGCTTTATTCCATCAAGTCTTCTGTCACTTCGGCCTGCCCGAGGACATTGTGTCTGATCGTGGAACTCAGTTCATGGTTTCAGGAGAGCGAGAGTATGGGACACAGCACATATCCACCTCCAGCGTGCAGTACGAAGCCACAAGAGCCAGGATGCTCGAAGGTCTGCAACTCCTATCTACCATACGGGACAAAAGGTCTGGCTCTCCAACAGGGATATCTGTCTTCGTCTGCCCTGTCGTAAGCTGAGTCCCTGCTACATAGGTCCATTCACCATCGAGAGGCAGATCAACGAAGTCACCTACCGCCAATCATCCAGATCGTCCAGCTCCCTGCCCCTCCGCCCCTGTCGTCGCCATCTCATGCAGACTTCAGGAGCCACCTGTGGGGGGGTTCTGTCCCAGAGGCTACATCATCTGCCACACCAGACCCTTCAGCTCCACCCACTCATTCAGCCTCACCGGAATTCTAATTGGACACACCTGGACCAGCTCATCATCTCACCAGTTGATGAAGCAGCCACTCTCATTCCACATTTGTCTGGTCTAGTTGGTACTTTCCTGTCAACTTACCCGACTTCTCTCCATGGTTCTCACCATCCTCTGTCTTCCACAATCCTCTTCATCGGTACCGATCATCAGGCTGCTACTCCTCCATTCCTACACAGAGATTGTTACCTCAGAGTTAAGTTTATGCAAACAATCTATATTCCATCAACTCACCTGTTTGATTCATCTGTTCTCTGCTATCACTGTTA

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000081_01241322_01259737.mRNA True 3204 mRNA 0.48 8 1241322 1261270

Neighbor

gene id symbol gene type direction distance location
CI01000081_01137104_01147739 NA coding upstream 93556 1137104 ~ 1147766 (+)
CI01000081_01120653_01123960 NA coding upstream 116673 1120603 ~ 1124649 (+)
CI01000081_01057614_01058675 NA coding upstream 182454 1056300 ~ 1058868 (+)
CI01000081_01041108_01050606 NA coding upstream 190697 1040062 ~ 1050625 (+)
CI01000081_01029679_01036021 NA coding upstream 205206 1029679 ~ 1036116 (+)
CI01000081_01401235_01401648 NA coding downstream 139803 1401073 ~ 1401654 (+)
CI01000081_01536670_01610329 TAF6 coding downstream 275400 1536670 ~ 1610329 (+)
CI01000081_01612060_01612809 NA coding downstream 350790 1612060 ~ 1613912 (+)
G293933 NA non-coding upstream 68792 1159877 ~ 1172530 (+)
G293950 NA non-coding upstream 72537 1164769 ~ 1168785 (+)
G293865 NA non-coding upstream 225784 1007950 ~ 1015538 (+)
G293803 NA non-coding upstream 524678 701075 ~ 716644 (+)
G293790 NA non-coding upstream 558955 681701 ~ 682367 (+)
G293893 NA non-coding downstream 31715 1292985 ~ 1293569 (+)
G294010 NA non-coding downstream 115494 1376764 ~ 1377215 (+)
G294054 NA non-coding downstream 173944 1435214 ~ 1435470 (+)
G294069 NA non-coding downstream 194718 1455988 ~ 1456250 (+)
G294085 NA non-coding downstream 233552 1494822 ~ 1495102 (+)
G293747 NA other upstream 495807 737051 ~ 745515 (+)

Expression


Co-expression Network