AMCG00015452 (rab1ba,LOC100695098,LOC103027853,LOC103373258,LOC101478491,LOC103148874,LOC107679256,LOC105022126)


Basic Information

Item Value
gene id AMCG00015452
gene name rab1ba,LOC100695098,LOC103027853,LOC103373258,LOC101478491,LOC103148874,LOC107679256,LOC105022126
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9712438 ~ 9718080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015452
CGGGTGAAAAAAAGGAGAGCGAGAGGAGAcagaagggggagagagagagagagaaaaaaaacacacacaagaaaggaaaaaatatctatctatcccGGCCGTGTCAAGGAAAGGGATCGAGGAAGGACGAGCACGACCCCCTGGCATAAACATCACGgcgagagagaagagggggagacTTTCGTCGGCGTTTTCCATCCCGTCATTGTTATTTCGCCTTATTAACCTGCCGAACAGCCGCCGGACCGAACCGAGCGAACCCGAGCTCCCCGACAGCCCACTCGCGTCCGACACCATGAACCCGGAATATGACTACTTGTTCAAGCTGCTGCTGATTGGCGACTCTGGCGTGGGCAAGTCCTGCCTCCTCTTGCGATTCGCTtgGGACACGGCCGGTCAGGAGAGGTTTCGGACAATCACCTCCAGTTACTACAGAGGGGCTCACGGCATCATCGTGGTGTATGATGTCACAGACCAGGAGTCCTACAACAACGTAAAGCAGTGGCTGCAGGAGATCGACCGCTACGCCAGCGAGAACGTCAACAAGCTGCTGGTCGGCAACAAGTGCGACCTGACCACAAAGAAGGTGGTGGACTACACTACGGCCAAGGAGTTCGCCGACTCCCTGGCCATCCCCTTCCTGGAGACCAGTGCCAAGAACGCCACCAACGTGGAGCAGGCCTTCATGACCATGGCTGCCGAGATCAAGAGGCGCATGGGCCCTGGGGCCACGGCAGGCGGCGACAAACCCAACCTCAAGATCGACAGCACCCCAGTACGACAGTCCGGGGGCGGCTGCTGCTAGGAtcagcctctctctcactctctctcgctctctttccctctctctcattcactttctctttctctctctttctgcctccTCACTTGCCACACTCCTCCACGCTCACTAGCACAGTAGTAGCTTAGAGGGAGACAGGGaagaagctgtgtgtgtgttttggggggggtCAAATTGTAGGACCCTCCCACCAccactcagagagagagagagggcagtaCACTAAGGTGTCTAAAGCCACCTCAACCACATCTTCCCACTTTTGACAGCaagggggg

Function

symbol description
rab1ba Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to several human genes including RAB1B (RAB1B, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-1B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015452 True 1080 mRNA 0.56 5 9712438 9718080

Neighbor

gene id symbol gene type direction distance location
AMCG00015451 NA coding downstream 21099 9686534 ~ 9691339 (-)
AMCG00015446 NA coding downstream 51459 9657586 ~ 9660979 (-)
AMCG00015448 pfdn2 coding downstream 90951 9617793 ~ 9621487 (-)
AMCG00015447 NA coding downstream 97329 9613686 ~ 9615109 (-)
AMCG00015449 LOC105026762,LOC106608888,LOC106577861 coding downstream 112934 9592388 ~ 9599504 (-)
AMCG00015453 NA coding upstream 378 9718458 ~ 9739315 (-)
AMCG00015454 NA coding upstream 38115 9756195 ~ 9769670 (-)
AMCG00015469 NA coding upstream 153668 9871748 ~ 9876514 (-)
AMCG00015470 NA coding upstream 181592 9899672 ~ 9909434 (-)
AMCG00015477 NA coding upstream 278983 9997063 ~ 10003088 (-)
G98012 NA non-coding downstream 6407 9705727 ~ 9706031 (-)
G98006 NA non-coding downstream 30756 9681165 ~ 9681682 (-)
G97861 NA non-coding downstream 183285 9114016 ~ 9529153 (-)
G97906 NA non-coding downstream 328314 9383508 ~ 9384124 (-)
G97860 NA non-coding downstream 602388 9094155 ~ 9110050 (-)
G98126 NA non-coding upstream 211482 9929562 ~ 10017869 (-)
G98138 NA non-coding upstream 218996 9937076 ~ 9938322 (-)
G98163 NA non-coding upstream 308034 10026114 ~ 10075893 (-)
G98211 NA non-coding upstream 389153 10107233 ~ 10165397 (-)
G98216 NA non-coding upstream 455021 10173101 ~ 10222525 (-)
G97897 NA other downstream 356706 9353217 ~ 9355732 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other downstream 528032 9174843 ~ 9184406 (-)
AMCG00015415 NA other downstream 555991 9152218 ~ 9156447 (-)
AMCG00015409 NA other downstream 672297 9038596 ~ 9040141 (-)
AMCG00015400 NA other downstream 752294 8954513 ~ 8960144 (-)
AMCG00015460 NA other upstream 90738 9808818 ~ 9815466 (-)
G98094 NA other upstream 119422 9837502 ~ 9839510 (-)
AMCG00015471 NA other upstream 160379 9878459 ~ 9896512 (-)
AMCG00015468 NA other upstream 255876 9973956 ~ 9986628 (-)
AMCG00015479 NA other upstream 300684 10018764 ~ 10026019 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G499527 NA non-coding CI01000344 null 348760 ~ 432269 (-)