AMCG00015415


Basic Information

Item Value
gene id AMCG00015415
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9152218 ~ 9156447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015415
GGTGGGTGCACTGTTGTCCAATTGCTGATCTCCATGTTGTCCTGCAGTTCCCAGAGCCCCAGCCAGGAGACATGATTGAGTTTCCCCGGACCAGCTTCAACCACTGGGGCCTGTACGTGGGCAACGGCTATGTCGTACACCTGGCACCCACCGGTGGCAGTGGTGGAGCCTCCGTCTCGTTCCTCTCCTCCTTCACCTCTCCTAGCGCCACTGTTGTGAAGGATCTACTGAAGGACGTGGCTGGGCCGGGCCTGAAGTTCCTGGTGAAGAACTTGGACCATCAGTACCAACCCCTGCCCAGAGACCAGATCCTGGAGAGCGCAGAGAAAATGATTGATGAGATAGTCCCGTACTCCGTCACCACCAAGAACTGCGAGCACTTTGTCACTGAGCTGCGTTACGGGCTGGCCGAGTCCAGACAGGTGAAAAATGCTCTTGGCAGCATTGGTTTAGCAGCTGTTGCTATCCTGGCGCTGAGGGTGATATTCCGGGTTTAGTGACCATGCCGGGACCTCAATAGGATGCTGGACGCTGGCCAGAGGGAAGACACTGACCCCTGGCCAGGGCTGACCTGTCCGATGCCCAGATGGATACAGACCAGTGCTCTGCAGCCGGACCAGGATCTTTCTAGCAGAGACATGGTCTCTAAGAGTACAGGGCACACATTTCTCTTATCTAATCAcctgtctttgtgtttctctaTCAATCTATGTGTCTACCTATCTTTACCTCCCATCTAATGTCTCTATCAATATATTAACCAATCTCTCTTTCTTTAACCAATTtatcattaattttatttacataggCGTCTCAACATCTATCAGTTTGTGGTTGTCTATACATAATTTTCACAAGTACTCTAAttgagaaatgtgtgtattcTTTCATATACTGAAATTTGCATCTAGGAAAAAAGTTTGatctatatatgtttttctttctttttctatttggCGTATTTTGTCTTCAGATCTCTggactaattattttaataaagtagGAAGACTCTTCAAATTCACTTTCCAATTCTATTTCCATGTTCAATCAAACAGTagaactacaaaataaatgtaatattaacaagtacacacagattaaattaacgatttaaaataactcaatttcaaatagttttttataaAGTTGCCAACTTTAAATCCAGACTTAATAagagcatttgaaataaatatttcaatgaatgatatataaattaccctgttttaatgttttagtgATACAAACATATGCTttcagttgtgttgtgttggagGCTCcatcccaaaaataaaaacatattgactTTGTCTGGTTTTAACAGTTTTTGCATGGGAGCTGCAATGTTTCGTtcttagttttaaaaacaattcttcaATGGAGTCTAATACCCGATCATATTATCAAAGCGTTGGAGGCCAAAAAGCACCCCATCCTTccataacaaaactaaaccctaaaataaaactaaaatagcttacaattatacaaataagAAGACTAGAACATGAAACAAttcccaaatgtattttcctgtttagaGCAGTCAAACTGACAAACCCTGGTCACACACCAATAGCTCAAAGatgagaataaaaaagaaaataaccgATCAGGCATTTATaggaataaaaatatttaagatCTGAAGCATGAAAAGCTTCTTAAAATGTCATTCAAATCTTCACTTCATGAATGACTGGACTGGGTACAGGTAAGTATGGCTTGGAGATAGGGTGTGTCGAGATGGGAGCCTTCAAGGAAAGACACACGATGACAATGGTGAACcatgaagaaaatgaaaccatGTTCAATGACGCCTTATCAACAGAGGAAAGAATACTAAGCCACACATTTCCAGTTGTTGAAGAGGTTTATAGTGGCTCAACCATATATGGATATTACACCCGGGGTGTCAGGCAGACTGTTATCAGTTTTGTTATCTCTTTCACTGCCACCTTACAATTGCCCCAAGAATGGTTTTCATTGCAGCTGGTCCTAGTAAATTCCTTTTTACTGAATCCACATCTCTTTCTCTGGATTATTTGACTCAGTTGGCATCACAAACAGAACGCCAATGTTTCTGTGTCGCAGGCTTCGTTACCAGTACAGATCAAGACAATGGATGAGTTCAGGAAACCCAGGGTATGTTGGCGAATTCAACCGGTTGAACCCATAATGAGGATTATAGGAAAAGGATGGCTGAGAtaatgtgggggaaaaatatagaaatcctatcctgtctttgtccttggtgtgctgttactcctaatttggttatcagcagctcacattcctttcttgcaacgtattatctgcaatgtaccttccaatgcaacgggcaatgtagaggttaatgattatgatcactgctagttattagaaatgaccattcagacactgattatagtatgttaaggccccttgggcgtatgtcccagagggggtagaaaagctttgttctatcttaaaacttttggggaacagtatcatgctggcctaaaatcctttgagttctgtgttgcgctgttccttGATATCACTAATTTGACAATTAAGTGTTAAAACAGTTGGCCATATGTATCATCTACATTTTACACAATGGTGAAAGAATTAAGGGGTATCACATTTTCaagtgcttttaattttttttaacaacaaaaaacaaaaacaacaaaaacagtccCTACATTTTATGGTTAAGTTGAAGAGTTAATTTCATATTATAAGAGTTTTGaagcagtttgtgtttgtatgagtGTGAATAGTTACATTTAATATCGTTCTCTCACTTGTGATTGTATCACATGTTCCAGCTGATGCCCTGTCAATCAAGTGTCCCGTCCCTCAGAGCTTTCGGCTGCTCTACCCACAGTCTGTCACACCATTCTTGGCTGATGACCTAATTTCTTCTCACATTCCAATAGAAACCTACCCCTCCGCCCTCAGTGATTCATATTGGCCGCTGTGATATGTTATCAAAGAATTGCATCAAAACCACGCTACAACCTCCATTCAACACTgttataaaaaattataataatgtgaaatgcatctttttaatcttttaattttaaatactgtaaacacTATTTGCAAACACCTGTAAAAGAAAattcaacaataataaataacagataaaacCCTTTTCAATCTTTGTCAATGAATTCaatcaacattaaattaaacattaatcaaCATTCCTTATGTCATAAGGAAATGTAATATCTTGCTATAGGCCTATATTTCAAACAATATGTGGACATATCTTCCACAGAGTGTACAGAATATACTTTCTctaaattaattgataaatataaataagaatatattatCATGGATGTATTTTACTGAAGTTTCTATCAAACGTTACTTTTAACATTGCATTACCGCACATCCTGATTCACATGACCTATAGTGCACTGCTGACATTGTGGCTGTGTGATGGAGCAAAGCCCATCCCTTTGTTTTCAACAGTGACTCATGTTATGTTTTGTGCTATTGGGAACTCTATTAAAATCGGTAAACCAAAGCAATGTTATGTCCTGAATTAAATGCAGCACACAGATCACAACGGGGGAAAACTATTACCTTTACTTGGGCTGGTATGTGTGGGGATGTGGGCAGCCATGCTTTGTAAAGCCAGTGAGGCCATTACAGAAGCCATCTTTCTTAGGGGTTTTAATCAGCTCCCCTACCATACTGTTCCTAAGAGGAGTCCcaagatgttttatttgtttagcaagtacattatttgtatttatattcctTTTGCATGTAAGGTTTATTAGGATTTTATGTGGATTTAAAGAGCTATTATGATGTTTCTGTTGATAACTAATGtatggttttaaatgtgtttttctttttgttccctTATGTTGGGAAATTATTTGGTCTGGTGGAGGGGCCCTTGAAACAAG
>TU122038
GTTCTTTGTTAATAAAACTGGTGGGTGCACTGTTGTCCAATTGCTGATCTCCATGTTGTCCTGCAGTTCCCAGAGCCCCAGCCAGGAGACATGATTGAGTTTCCCCGGACCAGCTTCAACCACTGGGGCCTGTACGTGGGCAACGGCTATGTCGTACACCTGGCACCCACCGGTAATGCGGTAtctgcattttacaaatgaGTAAAGACTGCATTATATCATCTAGTcgatgataattattattaataaagtcatacattcatatttcatatttccttTATCAGCTGTTATCTGTGtctatctatgtgtgtgtatgtgtgtgtgagttggcCTTTCAGGTGGCAGTGGTGGAGCCTCCGTCTCGTTCCTCTCCTCCTTCACCTCTCCTAGCGCCACTGTTGTGAAGGATCTACTGAAGGACGTGGCTGGGCCGGGCCTGAAGTTCCTGGTGAAGAACTTGGACCATCAGTACCAACCCCTGCCCAGAGACCAGATCCTGGAGAGCGCAGAGAAAATGATTGATGAGATAGTCCCGTACTCCGTCACCACCAAGAACTGCGAGCACTTTGTCACTGAGCTGCGTTACGGGCTGGCCGAGTCCAGACAGGTGAAAAATGCTCTTGGCAGCATTGGTTTAGCAGCTGTTGCTATCCTGGCGCTGAGGGTGATATTCCGGGTTTAGTGACCATGCCGGGACCTCAATAGGATGCTGGACGCTGGCCAGAGGGAAGACACTGACCCCTGGCCAGGGCTGACCTGTCCGATGCCCAGATGGATACAGACCAGTGCTCTGCAGCCGGACCAGGATCTTTCTAGCAGAGACATGGTCTCTAAGAGTACAGGGCACACATTTCTCTTATCTAATCAcctgtctttgtgtttctctaTCAATCTATGTGTCTACCTATCTTTACCTCCCATCTAATGTCTCTATCAATATATTAACCAATCTCTCTTTCTTTAACCAATTtatcattaattttatttacataggCGTCTCAACATCTATCAGTTTGTGGTTGTCTATACATAATTTTCACAAGTACTCTAAttgagaaatgtgtgtattcTTTCATATACTGAAATTTGCATCTAGGAAAAAAGTTTGatctatatatgtttttctttctttttctatttggCGTATTTTGTCTTCAGATCTCTggactaattattttaataaagtagGAAGACTCTTCAAATTCACTTTCCAATTCTATTTCCATGTTCAATCAAACAGTagaactacaaaataaatgtaatattaacaagtacacacagattaaattaacgatttaaaataactcaatttcaaatagttttttataaAGTTGCCAACTTTAAATCCAGACTTAATAagagcatttgaaataaatatttcaatgaatgatatataaattaccctgttttaatgttttagtgATACAAACATATGCTttcagttgtgttgtgttggagGCTCcatcc

Function

GO: NA

KEGG:

id description
K23266 RARRES3; retinoic acid receptor responder protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015415 True 3920 mRNA 0.39 3 9152218 9156428
TU122038 False 1467 lncRNA 0.41 2 9154856 9156447

Neighbor

gene id symbol gene type direction distance location
AMCG00015408 NA coding downstream 98126 9050001 ~ 9054092 (-)
AMCG00015411 frmd8,LOC106563469 coding downstream 123148 9024644 ~ 9029070 (-)
AMCG00015410 vps51 coding downstream 161977 8983579 ~ 8990241 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding downstream 169332 8977099 ~ 8982886 (-)
AMCG00015405 NA coding downstream 177709 8969459 ~ 8974509 (-)
AMCG00015420 NA coding upstream 29827 9186274 ~ 9201237 (-)
AMCG00015421 sf3b2,LOC106608993 coding upstream 61953 9218400 ~ 9230633 (-)
AMCG00015418 NA coding upstream 74866 9231313 ~ 9234491 (-)
AMCG00015422 mta2,LOC106577523,LOC106608586 coding upstream 81016 9237463 ~ 9251604 (-)
AMCG00015424 NA coding upstream 97640 9254087 ~ 9258101 (-)
G97860 NA non-coding downstream 42168 9094155 ~ 9110050 (-)
G97805 NA non-coding downstream 80080 9067943 ~ 9072138 (-)
G97801 NA non-coding downstream 369585 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 432659 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 484167 8664075 ~ 8668051 (-)
G97906 NA non-coding upstream 227061 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 524718 9681165 ~ 9681682 (-)
G98012 NA non-coding upstream 549280 9705727 ~ 9706031 (-)
G98126 NA non-coding upstream 773115 9929562 ~ 10017869 (-)
G98138 NA non-coding upstream 780629 9937076 ~ 9938322 (-)
AMCG00015409 NA other downstream 112077 9038596 ~ 9040141 (-)
AMCG00015400 NA other downstream 192074 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 313239 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 357444 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 569532 8579500 ~ 8582686 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 18396 9174843 ~ 9184406 (-)
G97897 NA other upstream 196770 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 652371 9808818 ~ 9815466 (-)
G98094 NA other upstream 681055 9837502 ~ 9839510 (-)
AMCG00015471 NA other upstream 722012 9878459 ~ 9896512 (-)

Expression


Co-expression Network