AMCG00015421 (sf3b2,LOC106608993)


Basic Information

Item Value
gene id AMCG00015421
gene name sf3b2,LOC106608993
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9218400 ~ 9230633 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015421
GCGCACATCCGCTTCCGCAGCAGCGTCGCTCTCGTGTTTGTTGTCTCCGCGTTTGAGAGATGGCGACCGACGGACCGCCCGGCACCGAGCAAAATTCACCCGATCTCGCCGGCACGGTGGGCGCCCTGAACACATGGAGCTTACCGGAGCTGCAGGCCAAGCTGGCCGAGATAGGAGCCCCTAACATGGCCGCCCGAGGGAGAGAAGGCTGCCCCTCTAACTCCCCAGATGCCTGCCCTGCCCATGCCCCCCATGCCCATGCCCCTGCTGCCTGGCATGCTGGGGATGATGCGCCCACCTGCACCTGGTATGAGGCTGCCCATGATGGAGCCGCCCGGCCTGCCGAGACTCGAGCCATGGAGGAGAAGATGAAAGAGCAGGAGCTCCTGGAGCAACAGAAGAGGGCGGCGGTGCTGCTGGAGCACGAGAGGCAGCAGGGCCTGGTGACACTGCAGCAGGGCAGCCCCCGGGGACCAGAGCCAGGGCCTCGCCCAGCCATGCTGCCCATGCCACCCATGCCTCAGATGCCACAAATGCCGCAGATGCCCCAGATGAACCCCATGAGAGATGGGGGCTCTTTTCGTGTCTTTGCAGGCATGgtcaacaacccccccccaccaccaccggGGATGTCGATCCCACAGGTCCTGGAGAAGATCCTGCAGCTGAAGGAGATGAGACAGGAGCAGCTGAGCACCGTGCTGCCTGaagaggaggagggcggAGAGCAGGAGGGCATGCTGGGCGCCGGTACTTTGTCAGAGAACGAGGAGGAGGACTCATCCGTGTCCAAGAAGGATAAAAGCCGCAAGCGCCGGaacaggaagaagaagaagaagaagactgGCAAGGCGGCAGGGGTGGAGGAGAAGAAGGTGGGGGAGGTGAAtggagaggcagagggggagaAGGTCAAGGAGAGCGAGCCAGAAGTGGAGATTGAATACATCACGGAGGAGCCTGAGATCTATGACCCCAACTTCATCTTCTTCAAGAGGATCTTCGAGGCCTTTAAGCTCACGGATGACgtgaagaaggagaaggaaaaggagCCGGAGAAGGCAGAGAAGCTGGAGGCCATGGCGGTGAAGAAGAAGGGCTttgaggaggagaagaaagacaGCGATGACAGCGATGAGGAAGCCCGGCCGGACGTTCCCAAGATGTCCAAGAAGAAGTTGCGCAGGATGAACCGGCTGACTGTGGCCGAGCTCAAGCAGCTCGTGGCCCGCCCAGACGTGGTGGAGATGCACGACGTGACGGCCCAGGAGCCGCGGCTGCTGGTGCACCTGAAGGCCACTCGCAACACGGTTCCCGTGCCTCGCCACTGGTGCTTCAAGAGGAAGTACCTGCAGGGCAAGAGGGGTATCGAGAAGCCGCCCTTCGAGCTGCCTGAATTCATCAAGAGGACTGGCATCCAGGAGATGAGGGAGGCCCTGCAGGAGAAGGAGGAAGCCAAGACCATGAAGACCAAGATGCGGGAGAAGGTGCGGCCCAAGATGGGCAAGATCGACATCGACTACCAGAAGCTGCACGACGCCTTCTTCAAGTGGCAGATCAAGCCCAAGCTCACCATCCATGGGGACCTGTACTACGAGGGTAAGGAGTTTGAGACCCGACTGAAGGAGAAGAAGCCGGGCGACCTCTCTGACGAGCTCCGGATCGCTCTGGGGATGCCAGTGGGGCCAAACTCTCACAAGGTGCCCCCCCCTTGGCTCATCGCCATGCAACGATACGGACCACCCCCTTCCTACCCCAACCTCAAGATCCCCGGGCTCAACTCCCCCATCCCAGAGCCCCCCGTGGATGAGACCGGGAAGCCGCTGTACGGAGACGTGTTCGGCACCAACACCGGGGACTTCCAGGCgaagacagaggaggaggaggtggaccGGACGCCCTGGGGGGAGCTGGAGCCCTCTGATGAAGAGTCAtccgaggaagaggaggaggaggagagtgaCGAGGACAAACCAGACGAGACGGGCTTCTTCACCCCTGCCGACAgTGGGTTGATCACCCCAGGAGGGTTCTCGTCGGTGCCAGCTGGCATGGAGACCCCAGAGCTGATTGAGCTGAGGAAGAAGAAGATCGAGGAGGCCATGGACGGGAATGAGACGCCCCAGCTGTTCACCGTGCTGCCGGAGAGGAGGACGGCCTCAGTGGGTGCGGCCATGATGGCGTCAACGCACATCTACGACGTGTCGGGGgCACTGAGCGGGCGGAAGGCAGTGGGCTCCCAGGAGACGCAGGGCGTAGAGGTGGCCCTGGCCCCCGAGGAGCTGGAGCTCGACCCCATGGCCATGACTCAGAAGTACGAAGAGCACGTGCGGGAGCAGCAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCTGAGCACGCGGCCAAGCAGAAGcagaagaagaggaaagCCCAGCCCCAGGACACCAGAGGAGGGGCCAAGAAATACAAGGAGTTCAAGTTTTAATCCGGAGAGAGGGCTGAGGAGGAGGTCCTACGAGGATACAGTCAATCGTCCCTTCTGTCCACCCATCCActcaaccccccaccaccccttttttaagaaaaaataaataaagacgaGACggagggagaaaacaaaacaaaacaaaaattgtatGAAGGCAGAGAGTTCTGCCCCCCCCTTGGTAGCTT

Function

symbol description
sf3b2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Is expressed in several structures, including mesenchyme; mesoderm; neural plate; neural rod; and tail bud. Orthologous to human SF3B2 (splicing factor 3b subunit 2).

NR:

description
PREDICTED: splicing factor 3B subunit 2-like isoform X2

GO: NA

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015421 True 2662 mRNA 0.61 21 9218400 9230633

Neighbor

gene id symbol gene type direction distance location
AMCG00015420 NA coding downstream 17163 9186274 ~ 9201237 (-)
AMCG00015408 NA coding downstream 164308 9050001 ~ 9054092 (-)
AMCG00015411 frmd8,LOC106563469 coding downstream 189330 9024644 ~ 9029070 (-)
AMCG00015410 vps51 coding downstream 228159 8983579 ~ 8990241 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding downstream 235514 8977099 ~ 8982886 (-)
AMCG00015418 NA coding upstream 680 9231313 ~ 9234491 (-)
AMCG00015422 mta2,LOC106577523,LOC106608586 coding upstream 6830 9237463 ~ 9251604 (-)
AMCG00015424 NA coding upstream 23454 9254087 ~ 9258101 (-)
AMCG00015423 NA coding upstream 33004 9263637 ~ 9273449 (-)
AMCG00015430 NA coding upstream 59813 9290446 ~ 9298266 (-)
G97860 NA non-coding downstream 108350 9094155 ~ 9110050 (-)
G97805 NA non-coding downstream 146262 9067943 ~ 9072138 (-)
G97801 NA non-coding downstream 435767 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 498841 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 550349 8664075 ~ 8668051 (-)
G97906 NA non-coding upstream 152875 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 450532 9681165 ~ 9681682 (-)
G98012 NA non-coding upstream 475094 9705727 ~ 9706031 (-)
G98126 NA non-coding upstream 698929 9929562 ~ 10017869 (-)
G98138 NA non-coding upstream 706443 9937076 ~ 9938322 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other downstream 33994 9174843 ~ 9184406 (-)
AMCG00015415 NA other downstream 61953 9152218 ~ 9156447 (-)
AMCG00015409 NA other downstream 178259 9038596 ~ 9040141 (-)
AMCG00015400 NA other downstream 258256 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 379421 8829302 ~ 8838979 (-)
G97897 NA other upstream 122584 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 578185 9808818 ~ 9815466 (-)
G98094 NA other upstream 606869 9837502 ~ 9839510 (-)
AMCG00015471 NA other upstream 647826 9878459 ~ 9896512 (-)
AMCG00015468 NA other upstream 743323 9973956 ~ 9986628 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033436 sf3b2 coding NC_007118.7 CM002891.2 6756206 ~ 6800689 (+)
grasscarp (Ctenopharyngodon idella) CI01000343_00365473_00380493 SF3B2 coding CI01000343 null 365473 ~ 380639 (+)