AMCG00015393 (zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012)


Basic Information

Item Value
gene id AMCG00015393
gene name zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8789660 ~ 8794774 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015393
ATGGTGAAGATCTTCGTGGGCAACGTGAACACCTCCACGACCGAACCAGAGCTGCGCACGCTGTTCGAGCAGTATGGCGAAGTGACGGACTGCGACATCCTGAAGAACTATGGCTTCGTGCACatggagaaagaggaggaggcgCAGCAGGCCATCGGGGCACTGCACAAGCACGAGCTCAATGGCTCGCGCATCACCGTGGAGTACGCCACCACCAAGATGCGCAACGCTACCAAGATCTACGTGGGCAATGTGCCCGAGGGCGCCACGGCGGGCAAGATCAAGGAGCTGTTCCAGCGCTACGGGAAGGTGGTGGAGTGCGACATCGTCAAGAACTACGCCTTCGTGCACATGCAGCGTGAGAACGAGGCCCTGGAGGCCATCCAGGAGCTCAACCACTCCAAGCTGGATGGGCAGAAGATCTTCGTGTCGCTCTCCCGCAGCAACCCAGTGAAGGACGGCCACGATGActtccccccgcccccacccccacaccacCACCCCTACCCGCcacaccaccacccccaccacccgcACCCTCCTCACCACCACCCTCACCACCACCCACACTACCTGCCCCCGCCACCACCCCCCGGGGAGTTCTACCCCCCCCGTGGCGGCCGCCTGccacccccgcccccaccccccctacCGCCCCCCCCGCCACGCGCCTACTACGAGCGCGAGCTGTATGAGAGGAGCCCCCGCTACGACCACTACGCTGCCGCCTCCGCTGCCGGtgcctccccttcctcctcccgcTTCTACGCCCGCGACGCCTACGAGCGCCGTCTACCCCCACCGCCTCCCcggcccccctcccccccactctactcctcctcctccgccaaCTACCGAGACCGCAGCCCTTTGGGCAGCCGCCGCACCCTGCTGCCCCCTCCGCCACCGCCCCCCTCTGCCGGGGCCTACAGCCGCGGCTACGCTCGCAGCCGGGAGTTCGGTGGGGGGCTTGTGCCCTCTCGGTACTCCCTGGGCTCTGGGTTTGACAAGGATGATTACTTTGACAAATACAGCAATGGCTTCAGCAGGGGTTACTGA
>TU121951
tcccccccactctactcctcctcctccgccaaCTACCGAGACCGCAGCCCTTTGGGCAGCCGCCGCACCCTGCTGCCCCCTCCGCCACCGCCCCCCTCTGCCGGGGCCTACAGCCGCGGCTACGCTCGCAGCCGGGAGTTCGGTGGGGGGCTTGTGCCCTCTCGGTACTCCCTGGGCTCTGGGTTTGACAAGGATGATTACTTTGACAAATACAGCAATGGCTTCAGCAGGGGTTACTGAGAGCAGGGTTGGGGGGTGGCAGGATTAATATTGgattatgattaatattgttCGCGACAGGGGCCGATTAATGAAGTTTAACATGAAGCAAAGCAGGTTGCACATGCTTTCAAAACCCCCCAGTCTAGGGATGTAGTTTCTAACCCCAAGGGGCAGGAGATGCAGGGTAGGGTAGGGTAGACTCtttatatcactttttttttttttttttttttcttgttaaccATATCATAttggatattttaatttatttttttaattttagctcTCATCACCGCCAATTGTTTTATGGTTTGGTGGGGGGGCAGCGGCAGATTTGGGGGAGCGAAGTGGGACAGGAGTAGACAGACGAGTAGATAGAGgcaaattaagttaattgacttgaatgggggagggggggctctGCTGTGTTGGTCAGTCAAAAGCactcagtgtttttattttcctgcaggCTCAGACTGCTCTCCCTGTTTGTCATTTTCTCAAAGACCCAGAACGAACCTTacataacaaaaggaaaaaaaaatctgcctcttccctccctccctccctccctccctctttctcacaCTCTCTCGTTCTTCCTTTTCTGCATCTGTCACCACCGAAGGCTCCTCGttcccgagagagagagactgtgagtGTGGAGGGATTATTGTCTGGGAAGGGGCAGGGGACCTCTCTATATATCCAGTGCTTTTAACaattaaagaaatcaaaatggtAGCACATACAGCCCATTCTGACGCAGTGCTTCTCCGCAAATTGTGGCCGACCCGAcccgaccgaccgaccgaccggCCGACCCGACTCGccgcccgcccgcccgcccgGCCGACAGTCTCCGTGCGGATTGCAGTGACCCATAGGACGGTCCAGCCCACCACTCCGACACGAACCAAAAcggaaacattaaaaaaaaaaaaacttaaaaaaaccttaaaaaacgCAGGAGTTTGTGCTCCCGCCTGCGTCGCGATTTTGCTCCTGCTGctggtttgtctgtctgtcactcgGATTTAACAGGCCGGAATGTTATAAAGGAATCAAcactgatgatgatggtgatgttgATGAGGAGTATTTCTCCTGATTATAATCATTCTTTTTAAGCCGACACtgatttctttaatttatttttttcctccatttttCTGAGACGCTCGTTTGTTCTGAAGCTGGGAGGGGTGAATCCTTGTGCTAGGGCTTTGGTTGGTTGAATGATCACGATgattctgattttaattttgtttttttattaatagtcTGGGTTGTCGTCGCTGTATCAAGTTGCTCTGCGCTGCTCTGTAACCTCCCTGTTTCTGCTCGACTTGTAAAGCTCCTCTCACTGCTTCACTCTTCATATAgagatataaatataattatacataaatatacatacatgtgatttgtttttaaaaattcttTGGTTTCACTTTTCAAAACGTAGTCTTCCTCTCCCGGATTGTCAGATCGAACccgattttatttttaatttaatttttttttttattttttttttaataatctgtgTGCTCttgtttaaagttaaataatcCCACTTTATGTGTTCCAATTGGTTCTTAGTTTGAGAAGTAAGGCATTCGCTTTGGTTtgggtttgtttatgttttgttttttttaaaccaggaaGTCTTTTTTTAACCTCCTCTGTCATGAAGCCGCTGTCCTCCATCTCCGCCTTAATAAAACACCGCATTCTGTAACACTCTCCTGGTGGCGTCACGTTGTTTTCCTTCGTTAGTGACACGCGTACGAGACGCACCCATGTCCACGCATACCTTGACACACATGTGCGTGCCTGCGTGCGTGTTTGTGCGTGCGTCTGTGTAGCCTAAACA
>TU121952
CGCCATTTTGCCGTTTCTATCGACagtgagagaggggagggaggtgcCATTGTAGGGTTAAACGAGGCATTGGTGGCAATAAAAACACTTGGAAAACCTTGGGGATAGAACCCCTCAAATCCTGCCCCCTGGAaacacagagactgagagagagagacaaaacgAACAAGAATAAACAAACGGGAAGGCTCCGCCCCCTTGGAAAAACACCCAGACAAGCAGTGACCAATTGTAGTTCCATAGAGCCCACCTCCCTCTANNNNNNNNNNNNNNNNcccccccccccctcctcctcttccaatCTTTCTTGATACAAACGGTTTACCCCCTTCTCCGCCACCGAGAAAGAAACCCCGAAGCCATCACCATGGTGAAGATCTTCGTGGGCAACGTGAACACCTCCACGACCGAACCAGAGCTGCGCACGCTGTTCGAGCAGTATGGCGAAGTGACGGACTGCGACATCCTGAAGAACTATGGCTTCGTGCACatggagaaagaggaggaggcgCAGCAGGCCATCGGGGCACTGCACAAGCACGAGCTCAATGGCTCGCGCATCACCGTGGAGTACGCCACCACCAAGATGCGCAACGCTACCAAGATCTACGTGGGCAATGTGCCCGAGGGCGCCACGGCGGGCAAGATCAAGGAGCTGTTCCAGCGCTACGGGAAGGTGGTGGAGTGCGACATCGTCAAGAACTACGCCTTCGTGCACATGCAGCGTGAGAACGAGGCCCTGGAGGCCATCCAGGAGCTCAACCACTCCAAGCTGGATGGGCAGAAGATCTTCGTGTCGCTCTCCCGCAGCAACCCAGTGAAGGACGGCCACGATGAct

Function

symbol description
zgc:77262 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck.

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015393 False 1059 mRNA 0.66 1 8791521 8792579
TU121951 True 2101 lncRNA 0.46 1 8789660 8791760
TU121952 False 839 TUCP 0.55 2 8792108 8794774

Neighbor

gene id symbol gene type direction distance location
AMCG00015384 NA coding downstream 4802 8782660 ~ 8784858 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 12246 8759865 ~ 8777414 (-)
AMCG00015386 NA coding downstream 55213 8733335 ~ 8734447 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding downstream 102013 8685767 ~ 8687647 (-)
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding downstream 118317 8668204 ~ 8671343 (-)
AMCG00015403 NA coding upstream 98081 8892855 ~ 8896268 (-)
AMCG00015401 NA coding upstream 134371 8929145 ~ 8933379 (-)
AMCG00015404 cnih2,LOC106922620 coding upstream 144138 8938912 ~ 8939915 (-)
AMCG00015405 NA coding upstream 174685 8969459 ~ 8974509 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 182325 8977099 ~ 8982886 (-)
G97801 NA non-coding downstream 7027 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 70101 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 121609 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 132839 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 155000 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 273169 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 299381 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 319242 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 588734 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 886391 9681165 ~ 9681682 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 206974 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 243865 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 377778 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 419629 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 506031 8223199 ~ 8283629 (-)
AMCG00015394 NA other upstream 34528 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 159739 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 243822 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 357444 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 380069 9174843 ~ 9184406 (-)

Expression


Co-expression Network