RNA id: TU121951


Basic Information

Item Value
RNA id TU121951
length 2101
lncRNA type sense_over
GC content 0.46
exon number 1
gene id AMCG00015393
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8789660 ~ 8794774 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcccccccactctactcctcctcctccgccaaCTACCGAGACCGCAGCCCTTTGGGCAGCCGCCGCACCCTGCTGCCCCCTCCGCCACCGCCCCCCTCTGCCGGGGCCTACAGCCGCGGCTACGCTCGCAGCCGGGAGTTCGGTGGGGGGCTTGTGCCCTCTCGGTACTCCCTGGGCTCTGGGTTTGACAAGGATGATTACTTTGACAAATACAGCAATGGCTTCAGCAGGGGTTACTGAGAGCAGGGTTGGGGGGTGGCAGGATTAATATTGgattatgattaatattgttCGCGACAGGGGCCGATTAATGAAGTTTAACATGAAGCAAAGCAGGTTGCACATGCTTTCAAAACCCCCCAGTCTAGGGATGTAGTTTCTAACCCCAAGGGGCAGGAGATGCAGGGTAGGGTAGGGTAGACTCtttatatcactttttttttttttttttttttcttgttaaccATATCATAttggatattttaatttatttttttaattttagctcTCATCACCGCCAATTGTTTTATGGTTTGGTGGGGGGGCAGCGGCAGATTTGGGGGAGCGAAGTGGGACAGGAGTAGACAGACGAGTAGATAGAGgcaaattaagttaattgacttgaatgggggagggggggctctGCTGTGTTGGTCAGTCAAAAGCactcagtgtttttattttcctgcaggCTCAGACTGCTCTCCCTGTTTGTCATTTTCTCAAAGACCCAGAACGAACCTTacataacaaaaggaaaaaaaaatctgcctcttccctccctccctccctccctccctctttctcacaCTCTCTCGTTCTTCCTTTTCTGCATCTGTCACCACCGAAGGCTCCTCGttcccgagagagagagactgtgagtGTGGAGGGATTATTGTCTGGGAAGGGGCAGGGGACCTCTCTATATATCCAGTGCTTTTAACaattaaagaaatcaaaatggtAGCACATACAGCCCATTCTGACGCAGTGCTTCTCCGCAAATTGTGGCCGACCCGAcccgaccgaccgaccgaccggCCGACCCGACTCGccgcccgcccgcccgcccgGCCGACAGTCTCCGTGCGGATTGCAGTGACCCATAGGACGGTCCAGCCCACCACTCCGACACGAACCAAAAcggaaacattaaaaaaaaaaaaacttaaaaaaaccttaaaaaacgCAGGAGTTTGTGCTCCCGCCTGCGTCGCGATTTTGCTCCTGCTGctggtttgtctgtctgtcactcgGATTTAACAGGCCGGAATGTTATAAAGGAATCAAcactgatgatgatggtgatgttgATGAGGAGTATTTCTCCTGATTATAATCATTCTTTTTAAGCCGACACtgatttctttaatttatttttttcctccatttttCTGAGACGCTCGTTTGTTCTGAAGCTGGGAGGGGTGAATCCTTGTGCTAGGGCTTTGGTTGGTTGAATGATCACGATgattctgattttaattttgtttttttattaatagtcTGGGTTGTCGTCGCTGTATCAAGTTGCTCTGCGCTGCTCTGTAACCTCCCTGTTTCTGCTCGACTTGTAAAGCTCCTCTCACTGCTTCACTCTTCATATAgagatataaatataattatacataaatatacatacatgtgatttgtttttaaaaattcttTGGTTTCACTTTTCAAAACGTAGTCTTCCTCTCCCGGATTGTCAGATCGAACccgattttatttttaatttaatttttttttttattttttttttaataatctgtgTGCTCttgtttaaagttaaataatcCCACTTTATGTGTTCCAATTGGTTCTTAGTTTGAGAAGTAAGGCATTCGCTTTGGTTtgggtttgtttatgttttgttttttttaaaccaggaaGTCTTTTTTTAACCTCCTCTGTCATGAAGCCGCTGTCCTCCATCTCCGCCTTAATAAAACACCGCATTCTGTAACACTCTCCTGGTGGCGTCACGTTGTTTTCCTTCGTTAGTGACACGCGTACGAGACGCACCCATGTCCACGCATACCTTGACACACATGTGCGTGCCTGCGTGCGTGTTTGTGCGTGCGTCTGTGTAGCCTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121950 lncRNA downstream 7027 8780737 ~ 8782633 (-) True G97801
TU121671 lncRNA downstream 70101 8719246 ~ 8719559 (-) True G97589
TU121653 lncRNA downstream 121609 8664075 ~ 8668051 (-) True G97575
TU121652 lncRNA downstream 132839 8655173 ~ 8656821 (-) True G97574
TU121638 lncRNA downstream 155000 8612495 ~ 8634660 (-) False G97562
TU121974 lncRNA upstream 162753 8954513 ~ 8955417 (-) False AMCG00015400
TU121954 lncRNA upstream 276183 9067943 ~ 9072138 (-) True G97805
TU122021 lncRNA upstream 302395 9094155 ~ 9110050 (-) False G97860
TU122020 lncRNA upstream 315521 9107281 ~ 9110050 (-) True G97860
TU122024 lncRNA upstream 322256 9114016 ~ 9529153 (-) True G97861
AMCG00015384 mRNA downstream 4802 8782660 ~ 8784858 (-) True AMCG00015384
AMCG00015388 mRNA downstream 12246 8759865 ~ 8777414 (-) True AMCG00015388
AMCG00015386 mRNA downstream 55213 8733335 ~ 8734447 (-) True AMCG00015386
AMCG00015385 mRNA downstream 102013 8685767 ~ 8687647 (-) True AMCG00015385
AMCG00015387 mRNA downstream 118317 8668204 ~ 8671343 (-) True AMCG00015387
AMCG00015394 mRNA upstream 38446 8830206 ~ 8838979 (-) True AMCG00015394
AMCG00015403 mRNA upstream 101095 8892855 ~ 8896268 (-) True AMCG00015403
AMCG00015401 mRNA upstream 137385 8929145 ~ 8933379 (-) True AMCG00015401
AMCG00015404 mRNA upstream 147152 8938912 ~ 8939915 (-) True AMCG00015404
AMCG00015400 mRNA upstream 162754 8954514 ~ 8959583 (-) True AMCG00015400
TU121599 other downstream 208559 8580299 ~ 8581101 (-) False AMCG00015372
TU121587 other downstream 246480 8541188 ~ 8543180 (-) False AMCG00015374
TU121510 other downstream 377778 8409987 ~ 8411882 (-) True G97455
TU121448 other downstream 655545 8131307 ~ 8134115 (-) False G97411
TU121101 other downstream 1003218 7786087 ~ 7786442 (-) True G97125
TU121952 other upstream 348 8792108 ~ 8794774 (-) False AMCG00015393
TU121969 other upstream 37542 8829302 ~ 8830534 (-) False AMCG00015394
TU121992 other upstream 164655 8956415 ~ 8960144 (-) False AMCG00015400
TU122010 other upstream 246854 9038614 ~ 9040141 (-) True AMCG00015409
TU122046 other upstream 384458 9176218 ~ 9178667 (-) False AMCG00015419

Expression Profile