RNA id: TU122046


Basic Information

Item Value
RNA id TU122046
length 934
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00015419
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9174843 ~ 9184406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGGCAGTGGCGCTCTGAGGCGCAGCGGCTCGTTCGGGAAGATTCGTGACGCTCTGCGCCGGAGCAGTGAGATGCTGGTCAAGAAGCTGCAGGGCAGTGGCCCCCAGGAGCCCCGCAACCCCGGGATGAAGAGAGCCAGCTCCCTCAACTTCCTGAACAAGAGCGCAGAGGACCCCACACAGCAGCCCCCAAGCAGCCTATCAGAGTCCAGGGGCCTGAGCGCCAGCAACGTGGACCTGTCAAGACGCAGCTCCCTGATTGGATGAAGAGCGGAAGTTTAGGGGTGGGGGGTAGGGGTAGTGTGATGGTGCCTGTGGAGGGGATTGGAGACGAATTGTGATGGAAAGAAAGTGATCCCCCTGCCCCCTTGggagttctttttttttttcagcaactttttggcctttaaaaaaaacaaaaaaaaaagggcaagTTTAGTCATAATGCCCTTGCTTTGGCACAGCGTGTGCTGTGAGGAGACTAGGTGCATTAAGACACCCATGACTGGTTTgctaaactgtaatttgtaacagttgggggaggggggggaagagatgcttatttaaaatagttaccCAGCATGCTTCTTTCTAGGTCTGGGCTCTGAGTGTCTTGCTGGAGGGTGCCCTCTATTGGTGGGAGACAGAAACACTCGGCTTTAACCACATGGAGAAAGATAAACCGTgagacggagggagggagggttaGTTGGTAAAATAATCTGCATCTATAATCTTGGCTCCAAACCtgaagagaagaggaggggaATTCTTCAAGAAGCTACTGGGTCTGGTTTTATTTCTCTTGCCTTCTCTGAGACGCTCAAACCCCAGACTTCATAagtaaagttaaattaataaattcacTCTAGGAGGCATGAAGTTTTGCGAATGCTCAGCACCTGTCAGTTTAAACTCACCTTTCTTAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122038 lncRNA downstream 19771 9154856 ~ 9156447 (-) False AMCG00015415
TU122021 lncRNA downstream 66168 9094155 ~ 9110050 (-) False G97860
TU122020 lncRNA downstream 66168 9107281 ~ 9110050 (-) True G97860
TU121954 lncRNA downstream 104080 9067943 ~ 9072138 (-) True G97805
TU121974 lncRNA downstream 220801 8954513 ~ 8955417 (-) False AMCG00015400
TU122081 lncRNA upstream 204841 9383508 ~ 9384124 (-) True G97906
TU122199 lncRNA upstream 502498 9681165 ~ 9681682 (-) True G98006
TU122205 lncRNA upstream 527060 9705727 ~ 9706031 (-) True G98012
TU122260 lncRNA upstream 634734 9813401 ~ 9815466 (-) True AMCG00015460
TU122391 lncRNA upstream 699792 9878459 ~ 9879140 (-) False AMCG00015471
AMCG00015415 mRNA downstream 19790 9152218 ~ 9156428 (-) True AMCG00015415
AMCG00015408 mRNA downstream 122126 9050001 ~ 9054092 (-) True AMCG00015408
AMCG00015409 mRNA downstream 136206 9038596 ~ 9040012 (-) False AMCG00015409
AMCG00015411 mRNA downstream 147148 9024644 ~ 9029070 (-) True AMCG00015411
AMCG00015410 mRNA downstream 185977 8983579 ~ 8990241 (-) True AMCG00015410
AMCG00015420 mRNA upstream 7607 9186274 ~ 9201237 (-) True AMCG00015420
AMCG00015421 mRNA upstream 39733 9218400 ~ 9230633 (-) True AMCG00015421
AMCG00015418 mRNA upstream 52646 9231313 ~ 9234491 (-) True AMCG00015418
AMCG00015422 mRNA upstream 58796 9237463 ~ 9251604 (-) True AMCG00015422
AMCG00015424 mRNA upstream 75420 9254087 ~ 9258101 (-) True AMCG00015424
TU122010 other downstream 136077 9038614 ~ 9040141 (-) True AMCG00015409
TU121992 other downstream 216074 8956415 ~ 8960144 (-) False AMCG00015400
TU121969 other downstream 345684 8829302 ~ 8830534 (-) False AMCG00015394
TU121952 other downstream 381444 8792108 ~ 8794774 (-) False AMCG00015393
TU121599 other downstream 595117 8580299 ~ 8581101 (-) False AMCG00015372
TU122072 other upstream 174550 9353217 ~ 9355732 (-) True G97897
TU122362 other upstream 658835 9837502 ~ 9839510 (-) True G98094
TU122506 other upstream 1011754 10190421 ~ 10192287 (-) False AMCG00015497
TU122509 other upstream 1017951 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other upstream 1017951 10196618 ~ 10198654 (-) False AMCG00015493

Expression Profile