RNA id: AMCG00015385


Basic Information

Item Value
RNA id AMCG00015385
length 1881
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00015385
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8685767 ~ 8687647 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACGTCCCTCTTCCAAGACGCACTGCCCCCGGCTGCTCCTATTGGCCCCTGCCATGCTGGTCCTGGCCCTGACTCCGGTGTGCGGCGCCGGCGAGATCCAGGCACCGGTCGGCGGGGGGAGGGGCAACTGCTCGAGGGCGGCGTCGGGCTGCTCGGACGGGGTGGTGCTGCCCGTGTGGAACCCCCAGGACCCATCAGTAGGGGACAAGGTGGCGCGGGCCATTGTGTACTTCGTGGCACTCATCTACATGTTCCTGGGGATGTCCATCATCGCTGACCGGTTCATGTCCTCCATCGAGGTCATCACCTCGCAGGAGAAGGAGATCACGGTCAAGAAGCCCAATGGCgagaccaccaccaccaccgtgCGCATCTGGAACGAGACGGTCTCCAACCTCACCCTCATGGCGCTGGGCTCCTCTGCCCCCGAGATCCTGCTGTCTGTGATCGAGGTGTGCGGGCACCAGTTTGAGGCCGGCGACCTGGGGCCCTCCACCATCGTGGGCAGCGCCGCCTTCAACATGTTCGTCATCATCGCCATCTGCGTCTACGTGGTGCCTGACGGCGAGACACGCAAGATCAAACACCTGCGTGTGTTCTTTGTCACAGCCGCCTGGAGCATCTTCGCCTACGTGTGGCTCTACATCATCCTATCCGTGTCCTCCCCAGGCGTGGTGGAGGTGTGGGAGGCGGTGCtcaccttcttcttcttccccctATGCGTGCTGCAGGCCTGGGTGGCCGACCGGCGCCTGCTCTTCTACAAGTACGTGCGCAAGCGTTACCGGGTGGACAAGCATCGTGGCATCATCGTGGAGACAGAAGGCGGGGACGGGCCCTTCGCCAAGTTGGATATCGAGATGGACGGCCAGCCAGCGCTCAACTCACACAAGGAGGCGCTGGACGGGATGCTGTGTGGCGGGGGTGAGGACGGGGTGGGAGGAGGCGGCGGCGGGAGGGACCAGGAAGACGAGGCGCGGCGGGACATGGCACGCACGCTGAAGGAGTTGAAGCAGAAGCACCCGGACAAGGATATGGAGCAGCTGATCGAGATGGCCAACTACCAGGTGCTGATCCAGCAACAGAAGAGCCGGGCCTTCTACCGCATCCAGGCCACCCGCATGATGATCGGTGCTGGCAACATCTTAAAGAAGCACGCGGCCGACCAGGCACGCAAGGTGGTGAGCTGCCACGAGCCACGGGCAGAGGAGGAGGACCCGAGCACCATCCGCGTGGCCTTTGAGCCCTCCCACTACCAATGCTTTGAGAACTGCGGTTCACTCACCCTGGCCGTGGGCCGGCGGGGGGGTGAACTGGAATGCACGGTCAAGGTGGACTACCGCACGGAGGATGGCACAGCCAACGCGGGCTCCGACTACGAGTTCGCTGAGGGCACACTGGTCTTCAAGCCGGGCGAGACGCTGAAGGAGATCACCGTGGGCATCATTGATGACGACATCTTCGAGGAGGACGAGCACTTCTATGTCCACCTCAGCAATGTCCGTGTGGTCTGGCCAGAGCCGGGAGGGGGAGATTCGGGGGCCCCCCCCCTCACCTCTGCCACTTCTAACGTCGCGTCCACCCCCTCCCTGCTCCTGGCCACCACCCCGCCCCCGCCCAAGGCTGTGCTGGGTGCTGCCCACACCGCCACCGTCACCATCTTCGATGACGACCATGCTGGCATTTTCACCTTCGAGAGCGAGAGCACGCGGGTGAGCGAGAGCGTGGGCGTTATGCGAGTCAAGGTGCAGCGCACCTCGGGTGCCCGGGGCACCGTGGCGCTGCCCTATCGCACAGTGGAGGGCACAGCCAAGGGCGGAGAGGACTACGAGGAGGTGGCGGGCAAGCTGGAGTTCCTCAACGACGAAACCATGTGA

Function

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001947 heart looping biological_process
GO:0007154 cell communication biological_process
GO:0042044 fluid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121653 lncRNA downstream 17716 8664075 ~ 8668051 (-) True G97575
TU121652 lncRNA downstream 28946 8655173 ~ 8656821 (-) True G97574
TU121638 lncRNA downstream 51107 8612495 ~ 8634660 (-) False G97562
TU121639 lncRNA downstream 57268 8612495 ~ 8628499 (-) True G97562
TU121636 lncRNA downstream 74371 8610947 ~ 8611396 (-) True G97561
TU121671 lncRNA upstream 31599 8719246 ~ 8719559 (-) True G97589
TU121950 lncRNA upstream 93090 8780737 ~ 8782633 (-) True G97801
TU121951 lncRNA upstream 102013 8789660 ~ 8791760 (-) True AMCG00015393
TU121974 lncRNA upstream 266866 8954513 ~ 8955417 (-) False AMCG00015400
TU121954 lncRNA upstream 380296 9067943 ~ 9072138 (-) True G97805
AMCG00015387 mRNA downstream 14424 8668204 ~ 8671343 (-) True AMCG00015387
AMCG00015379 mRNA downstream 62051 8613256 ~ 8623716 (-) True AMCG00015379
AMCG00015380 mRNA downstream 77459 8601327 ~ 8608308 (-) True AMCG00015380
AMCG00015372 mRNA downstream 103081 8579500 ~ 8582686 (-) True AMCG00015372
AMCG00015374 mRNA downstream 139972 8541355 ~ 8545795 (-) True AMCG00015374
AMCG00015386 mRNA upstream 45688 8733335 ~ 8734447 (-) True AMCG00015386
AMCG00015388 mRNA upstream 72218 8759865 ~ 8777414 (-) True AMCG00015388
AMCG00015384 mRNA upstream 95013 8782660 ~ 8784858 (-) True AMCG00015384
AMCG00015393 mRNA upstream 103874 8791521 ~ 8792579 (-) False AMCG00015393
AMCG00015394 mRNA upstream 142559 8830206 ~ 8838979 (-) True AMCG00015394
TU121599 other downstream 104666 8580299 ~ 8581101 (-) False AMCG00015372
TU121587 other downstream 142587 8541188 ~ 8543180 (-) False AMCG00015374
TU121510 other downstream 273885 8409987 ~ 8411882 (-) True G97455
TU121448 other downstream 551652 8131307 ~ 8134115 (-) False G97411
TU121101 other downstream 899325 7786087 ~ 7786442 (-) True G97125
TU121952 other upstream 104461 8792108 ~ 8794774 (-) False AMCG00015393
TU121969 other upstream 141655 8829302 ~ 8830534 (-) False AMCG00015394
TU121992 other upstream 268768 8956415 ~ 8960144 (-) False AMCG00015400
TU122010 other upstream 350967 9038614 ~ 9040141 (-) True AMCG00015409
TU122046 other upstream 488571 9176218 ~ 9178667 (-) False AMCG00015419

Expression Profile