AMCG00015795 (cct7,LOC102781788)


Basic Information

Item Value
gene id AMCG00015795
gene name cct7,LOC102781788
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22661061 ~ 22664968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015795
CCCACACCGGTTATCCTGCTGAAGGAGGGGACAGACACGTCTCAGGGTGTCCCCCAGCTCGTCAGCAACATCAATGCCTGCCAGGTCATCGCTGAGGCGGTGCGCACCACCCTGGGGCCCCGTGGCATGGACAAGCTGATGGTGGACCCCAGAGGAAAAGCTACGATCTCCAATGATGGCGCCACTATCTTGAAGCTCCTGGATGTGGTCCACCCGGCGGCCAAAACCCTGGTGGACATCGCCAAGTCTCAGGACGCAGAGGTTGGCGATGGTACGACCTCAGTCACCCTGCTGGCAGCCGAGTTCCTGAAGCAGGTGAAACCGTACGTGGAGGAGGGGCTGCACCCTCAGATCATCATCCGCGCCTTCCGCACAGCCACCCACCTGgCTTTGTCAAAGATCAAAGAAATTTCAGTCACAGTGAAAAAGGATGATAAGCAGGAGCAGAGGAGCCTGCTGGAGAAGTGTGCGGCCACAGCATTGAACTCCAAGCTGATTGCCGGCCAGAAGGAGTTCTTCTCCAAGATGGTGGTGGATGCTGTGATGATGCTGGATGAATTACTGCAGCTGAAGATGATTGGTGTGAAGAAAGTGCAGGGAGGAGCCCTTGAGGATTCCCAGCTGGTGGCGGGTGTGGCCTTTAAGAAGACCTTCTCTTACGCTGGGTTCGAGATGCAGCCCAAGAAGTACGAGAACCCCAGGATTGCCCTCCTCAACATCGAGCTGGAACTCAAGGCAGAGAAGGACAATGCTGAAGTCAGGGTTAAGAACGTGGAGGATTATCAGGCCATTGTTGATGCGGAGTGGAACATCCTGTATGACAAACTGGAGAAGATCTACAAGTCTGGTGCCAAGGTGGTGTTGTCCAAGTTGCCCATTGGGGACGTGGCCACGCAGTACTTCGCTGACCGGGACCTGTTCTGTGCCGGGAGAGTGCAGGAGGAGGATCTCAAGAGGACTATGATGGCTTGCGGGGGCTCAATCCAGACCAGCGTGGGGGCTTTGACAGACGACGTTCTGGGCCAGTGTGCTCTCTTCGAGGAGGTCCAGGTCGGAGGTGAAAGGTATAACGTCTTCAAGGGCTGCCCCAAGGCCAAGACCTGCACCATCATCCTGAGGGGAGGAGCGGAGCAGTTCATGGAGGAGACAGAGCGCTCGTTGCACGATGCCATCATGATTGTCCGCAGGGCCATCAAGAATGACTCCATCGTCGCAGGAGGAGGTGCCATTGAGATGGAGCTGTCCAAGTTCCTGCGCGATTACTCCAGGACCATCCCTGGGAAACAGCAGCTGCTGATCGGCGCCTACGCCAAGGCCCTGGAGATCATCCCCCGCCAGCTGTGTGACAACGCTGGCTTCGATGCCACCAACATCCTCAACAAGCTGCGAGCCAAACATGCACAGGGTGGCATGTGGTTCGGGGTGGATGTGAACAACGAGGACATCGCTGACAACTTCGTGGCATGCGTGTGGGAGCCCTCGGTGGTCCGCATCAATGCCCTCACCGCTGCGTCCGAGGCCGCCTGCCTCATCCTCTCTGTGGACGAGACCATCAAGAATCCTCGCTCCTCTGGGGACGAGGCTCCCGCAGGCCGAGGCAGAGGCCGGGGCCGCCCCCATGCCCACTAG

Function

symbol description
cct7 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT7 (chaperonin containing TCP1 subunit 7).

NR:

description
PREDICTED: T-complex protein 1 subunit eta

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09499 CCT7; T-complex protein 1 subunit eta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015795 True 1629 mRNA 0.58 11 22661061 22664968

Neighbor

gene id symbol gene type direction distance location
AMCG00015788 NA coding upstream 482804 22166231 ~ 22178257 (+)
AMCG00015787 NA coding upstream 514990 22103118 ~ 22146071 (+)
AMCG00015786 NA coding upstream 595702 22045949 ~ 22065359 (+)
AMCG00015782 NA coding upstream 1431406 21227280 ~ 21229655 (+)
AMCG00015781 atrn coding upstream 1436482 21157154 ~ 21224579 (+)
AMCG00015797 NA coding downstream 42220 22707188 ~ 22715143 (+)
AMCG00015794 NA coding downstream 93167 22758135 ~ 22767486 (+)
AMCG00015801 NA coding downstream 185836 22850804 ~ 22874803 (+)
AMCG00015807 NA coding downstream 229796 22894764 ~ 22907142 (+)
AMCG00015806 NA coding downstream 254212 22919180 ~ 22920439 (+)
G100641 NA non-coding upstream 211845 22446374 ~ 22449216 (+)
G100639 NA non-coding upstream 372213 22288623 ~ 22288848 (+)
G100568 NA non-coding upstream 846346 21814371 ~ 21814715 (+)
G100507 NA non-coding upstream 1350456 21306606 ~ 21310605 (+)
G100502 NA non-coding upstream 1595676 21064050 ~ 21065385 (+)
G100707 NA non-coding downstream 155533 22820501 ~ 22820703 (+)
G100709 NA non-coding downstream 170286 22835254 ~ 22923396 (+)
G100776 NA non-coding downstream 551083 23216051 ~ 23218316 (+)
G100801 NA non-coding downstream 618723 23283691 ~ 23284077 (+)
G100858 NA non-coding downstream 1097323 23762291 ~ 23762523 (+)
G100338 herc3 other upstream 2392776 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 3889095 18744887 ~ 18771966 (+)
G100007 NA other upstream 4335157 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 5529286 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 6162530 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 13869 22678837 ~ 22683895 (+)
G101061 NA other downstream 2200121 24865089 ~ 24865552 (+)
G101248 NA other downstream 3598947 26263915 ~ 26264308 (+)
G101275 NA other downstream 3708185 26373153 ~ 26377699 (+)
G101400 NA other downstream 5225584 27890552 ~ 27992014 (+)

Expression


Co-expression Network