AMCG00015801


Basic Information

Item Value
gene id AMCG00015801
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22850804 ~ 22874803 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015801
ATGGAGGAGCGGCAGGACCAGCTGACAATACAGACTGAGCCGCAGGGGGTTCTTCCTAAAGAGAAGGCATGGGCTCTTTGCAAGGGCATCTTATCACACTCGGGGCGGCTGTCTGAGCCCCGCGCGTTTCAGCTCGTGCCTTTTGTAATGACTGCCTTTAATAATGTGTCACTCGCACACAATGACAGGAGCATCGTGGGGGGCGGCATTTCCATGGCAATAGCATCACTCGAGGGAAGGCTGCTCAGTCACCGTAGACTGGGAAGGGAGGGGGAGGCGTCTGGAGTGAGAGAGTCAGACAGCAAGACTGCAGGCACCTTCCTGCTGCACCCTGTCACTGGCATACTGTACCTGGGGGCCCAAGACGCCATCCTGGCTGTCGACACCAAGGACTTGAAGAAACCCCACAAAAAGaTTGACTGGGTGGTACCTGTGGATAAGCAGCAATCCTGTACCAGCAAAGGCAAGACTGAGGCCGACTGTCGCAACTTTGTCCGACTGCTGCAGTTTCTCAGCGACGACCGGATCTTTGTGTGTGGGACCTACGCCTTCGACCCACAGTGCGCCTTCATCAATGTGACAGACTTCACCCTGGAAAAACATGATGACGGCAGTGTCAAGATGGAGACCGGGAAGGGGAAGTGTCCATTCGAGCCCAGTCAGCACTACACTGCTGTCATGGCAGATGAAGTCCTGTATGCCGCTGCCACCAGCAACTTCCTGGGCACAGCCTTTGACATCACCAGAGCAACGGGCAACGAGGGGGAGCGCATCCGCACAGAGACGTCCAGCACCTGGCTGAGTGACCCAGAGTTTGTGAGCTCGGCCTTCATTCCTGAGAAGGAACCCACGGTCGACGATGACAAGATCTACTTCTTCTTCACTGAAGTGGCCAAGGAGTACGACTTTTACACCAAGATCAAGGTGCCTAGGGTGGCCAGGGTCTGCAAGGGAGATGTGGGTGGGATGAAGACCCTGCAGAAGCGCTGGACGACGTTCCTGAAAGCCCAGCTGGTGTGTGAGGACAGACAGAGTGGCCAGCGCTACAACATCCTGACAGACGTggagcGAGAGGAGgtatctgcagtgtgtgtgtacagcctGGAAGACATTAATAAGGTGATGGCTGGTCCATACAAGGAGCTGAAGAAGAACTGTGAGAACTGGCAAAACCCAGACCCAGTTCCCCAACCGCGACCTGGACagTGCATCGGCAAGGCCATGAGGGAAATGGGCTTCGTGTCGTCCTTGATGCTGCCAGACAAGGTGCTGACCTTCGTGCGGGACCACCCACTGATGGAGAACGCCGTGGAGGCCCAGCCCCTCCTGTCCCGCAGTGGCGTCACCTACACCCGCATCGCCGTCAGCCTGGTGCCCGGCCACGCCACTGCGGCCATGCTGTATCTGGGCACAGACCGTGGGGAGCTGCACCAGGTGTCCGTGGTGCGAAACAACGCCTCCCTCATCCAGCAGAAGGAGCTGTTCCCAGTCACCGAGCCTGTCAACAACATCCTGCTCACAAAGGACTGGGTGCTGGTGGGGTCCCCCGGCTCTCTGGTGAAACTGCCGgagcagcagtgcagtgtgtacagcAGCTGTGCGGACTGCGTGCGTGCCCCGTGCGGTTGGGACCCTGAGCAGAACCGCTGCGTCCCAGCAGATCCACACCGTCCAGGGACTCTGCAGGAAGTGCAGTCTGGCAATGTGCAGGAGCTGTGTAAGACAGAAGAGAggcGCTGCGCTCCACAGGTACAGTTGGTGATGGCGGTGCCAGGGCTGCACTTGATGCTGCCTTGTGTGCAGCTGTCGCCCTCCCCCTGCCACTGGGAGTACCCCAAGGACCGGCACACGCGGCAGCACCGCAGCCACCTGGAGATCACCGTGTCGCCGGACAGCCTGGGCCACTACAGCTGCCGCTGCGAGGAGGGGAGCCTGGCGCGGGGGCTGCGGCTGTGCGAGAGGGCCGCCTACGACGTCGTGATCGACAGCCCCAACACCAAGGCCGCCACCGGGGTGCGCCGGCACCACACAGTGGGCATCTCCCTCGTCCTGTTCCTGCTGGGCTTGTTCCTGGGGGCGGGAGGAATGTACTGCTTCTCCAGGTTGCGCTCCCGCCGAAACCCCATTACCGAGAAAGCCCCCTACCCTGGTACACCCAACtctcccagcagccccagccTGCTGTCGGAGGGGGTGCCGCTAACGGAGAAGAAGAACGGCGCACTGAACGGGCACGCTTACGCCAACATCAACCAGGCCTGTGAGAATGGGAATGGGAGGGAGGgtgagaagggagggagggaaagagagggggaggaggtggaCAGCCCTAGAGTGATGATGCTGGCCGGGGCTCCGCTGGCCTCCTGTGAGGAGAGCTCCATCTGA

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015801 True 2388 mRNA 0.60 14 22850804 22874803

Neighbor

gene id symbol gene type direction distance location
AMCG00015794 NA coding upstream 83318 22758135 ~ 22767486 (+)
AMCG00015797 NA coding upstream 135661 22707188 ~ 22715143 (+)
AMCG00015795 cct7,LOC102781788 coding upstream 185836 22661061 ~ 22664968 (+)
AMCG00015788 NA coding upstream 672547 22166231 ~ 22178257 (+)
AMCG00015787 NA coding upstream 704733 22103118 ~ 22146071 (+)
AMCG00015807 NA coding downstream 19961 22894764 ~ 22907142 (+)
AMCG00015806 NA coding downstream 44377 22919180 ~ 22920439 (+)
AMCG00015811 NA coding downstream 73859 22948662 ~ 22958584 (+)
AMCG00015810 NA coding downstream 102117 22976920 ~ 22979992 (+)
AMCG00015813 NA coding downstream 235469 23110272 ~ 23116783 (+)
G100707 NA non-coding upstream 30101 22820501 ~ 22820703 (+)
G100641 NA non-coding upstream 401588 22446374 ~ 22449216 (+)
G100639 NA non-coding upstream 561956 22288623 ~ 22288848 (+)
G100568 NA non-coding upstream 1036089 21814371 ~ 21814715 (+)
G100507 NA non-coding upstream 1540199 21306606 ~ 21310605 (+)
G100776 NA non-coding downstream 341248 23216051 ~ 23218316 (+)
G100801 NA non-coding downstream 408888 23283691 ~ 23284077 (+)
G100858 NA non-coding downstream 887488 23762291 ~ 23762523 (+)
G100863 NA non-coding downstream 964995 23839798 ~ 23961637 (+)
G100903 NA non-coding downstream 1196023 24070826 ~ 24156851 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 166909 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 2582519 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 4078838 18744887 ~ 18771966 (+)
G100007 NA other upstream 4524900 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 5719029 17098459 ~ 17131775 (+)
G101061 NA other downstream 1990286 24865089 ~ 24865552 (+)
G101248 NA other downstream 3389112 26263915 ~ 26264308 (+)
G101275 NA other downstream 3498350 26373153 ~ 26377699 (+)
G101400 NA other downstream 5015749 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 5702697 28577500 ~ 28580829 (+)

Expression


Co-expression Network