AMCG00015892 (spcs3,LOC106602378)


Basic Information

Item Value
gene id AMCG00015892
gene name spcs3,LOC106602378
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 27986755 ~ 27997677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015892
GCGGGAATGGCCGAGGGGAAATAGCAATGGATAGCCCGTGGCGCGCAGGGAGTGTCCAGGCTCGAATCCCCCTCCCGCGAAGAGGATTGTCGCATTTCCAgCCGGGAAGTACTTGCGATTTTCTTGAACTTCCGTGTTTCAGTGCCGAGACTTCCTGCTCGCAGTCGGCGGCTTCCGGGAGAGCTGGCAGCGGGACTGGTGTGTGTTGAGTCCAGCGTCTGTGCCATCGCAGAGCATTGATCATGAACACCGTGCTGTCGAGGGCAAACTCCCTCTTCGCCTTCTCGCTCAGCGTGATGGCAGCGCTCACTTTCGGCTGCTTTGTCACCACGGCCTTCAAAGACCGCAGCGTCCCGGTCAACATCCACGTCTCCAGAGTCACGCTGAAAAATGTGGACGACTTCACGGGACCAAGAGAGAGAAGTGACTTGGGTTTCGTCACCTTTGACATTTCGGCCGATATCCTTTATCAAAACCATTCGGATTCTTTCTGGCCCATATTTGACTGGAATGTCAAGCAGCTGTTCCTGTATCTGTCAGCCGAATATGCAACCAAAAGCAACGCCTTAAACCAGGTGGTGTTGTGGGACAAGATTGTGCTCAGGGGAGAGAGCACCAAGCTAAACCTGAAGGACATGAAATCAAAGTATTTCTTTTTCGATGATGGCAGTGGTCTTCGGGCCAATAAAAACATCACCTTAACACTGTCGTGGAACGTGGTACCAAATGCCGGCATCCTGCCTCTCGTCATGGGCTCGGGACACAAGTCTATTCCATTTCCGGAGTCTTACGAGGCAACGAAGAGCTACTGAATTCTGTAGGTTGTTTGTAAATGGTGTACAATCTTGTATGAGTTTTAATAAAAGTTTACCACATGTCTCCGTTCTGTATTGTTCTTGTTCCGACTGTATATTTGCAGTTAGAGTTTGGGTTGTCCATATTGGAAAGAAGTGGATTTCTAACGGGTGCATTGCTGCTCATTAATTTTGCATTCGAAAACCTGTGAGCTACATTATTAGTGTGAGCATCTGTCAGCCATGTTTTCTACCACACTGAAGTGACTTTAAAGCATTATACTCAATCACAAATCTCTAGCACAGTATCATGGTGTATCTGTATAATCTATAAATAgtgtttattcatatatttaaagattCTTGTCCATCGTGATACAGACATTAATACAGGCTAtctgtcattaaaatgaatagccCTTTGCGATCACTAAAACTAGTTTGAATCGGGTTAAtctgtaactttttttgttcttgtctaTCACAAT
>TU126655
TGCGGGAATGGCCGAGGGGAAATAGCAATGGATAGCCCGTGGCGCGCAGGGAGTGTCCAGGCTCGAATCCCCCTCCCGCGAAGAGGATTGTCGCATTTCCAgGAAAAATGTGGACGACTTCACGGGACCAAGAGAGAGAAGTGACTTGGGTTTCGTCACCTTTGACATTTCGGCCGATTTGAAGCCCATATTTGACTGGAATGTCAAGCAGCTGTTCCTGTATCTGTCAGCCGAATATGCAACCAAAAGCAACGCCTTAAACCAGGTGGTGTTGTGGGACAAGATTGTGCTCAGGGGAGAGAGCACCAAGCTAAACCTGAAGGACATGAAATCAAAGTATTTCTTTTTCGATGATGGCAGTGGTCTTCGGGCCAATAAAAACATCACCTTAACACTGTCGTGGAACGTGGTACCAAATGCCGGCATCCTGCCTCTCGTCATGGGCTCGGGACACAAGTCTATTCCATTTCCGGAGTCTTACGAGGCAACGAAGAGCTACTGAATTCTGTAGGTTGTTTGTAAATGGTGTACAATCTTGTATGAGTTTTAATAAAAGTTTACCACATGTCTCCGTTCTGTATTGTTCTTGTTCCGACTGTATATTTGCAGTTAGAGTTTG

Function

symbol description
spcs3 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS3 (signal peptidase complex subunit 3).

NR:

description
signal peptidase complex subunit 3

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12948 SPCS3, SPC3; signal peptidase complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015892 True 1282 mRNA 0.46 6 27986755 27997676
TU126655 False 619 lncRNA 0.47 5 27987108 27997677

Neighbor

gene id symbol gene type direction distance location
AMCG00015888 NA coding downstream 137961 27841123 ~ 27848794 (-)
AMCG00015885 zgc:153720,LOC107552026,LOC107670970,LOC107748832 coding downstream 1018394 26952466 ~ 26968361 (-)
AMCG00015884 LOC106610060 coding downstream 1133571 26815694 ~ 26853184 (-)
AMCG00015883 tenm3,LOC107737101 coding downstream 1196310 26771364 ~ 26790445 (-)
AMCG00015878 NA coding downstream 1349373 26590318 ~ 26637382 (-)
AMCG00015899 NA coding upstream 422358 28420035 ~ 28420653 (-)
AMCG00015898 NA coding upstream 423327 28421004 ~ 28430491 (-)
AMCG00015904 galnt7 coding upstream 593094 28590771 ~ 28608450 (-)
AMCG00015903 LOC106610173 coding upstream 620899 28618576 ~ 28632799 (-)
AMCG00015905 galntl6,si:ch211-15e22.3,LOC107670789 coding upstream 648654 28646331 ~ 28655271 (-)
G101388 NA non-coding downstream 317000 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 1216487 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 1411545 26574385 ~ 26575210 (-)
G101317 NA non-coding downstream 1412468 26574066 ~ 26574287 (-)
G101309 NA non-coding downstream 1461025 26523659 ~ 26525730 (-)
G101571 NA non-coding upstream 1210620 29208297 ~ 29269160 (-)
G101660 NA non-coding upstream 1583172 29580849 ~ 29638632 (-)
G101728 NA non-coding upstream 1977716 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 2338410 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 2748892 30746569 ~ 30746808 (-)
G101067 NA other downstream 2985865 24992953 ~ 25000890 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other downstream 4240052 23743790 ~ 23746703 (-)
AMCG00015800 NA other downstream 5284506 22680694 ~ 22702249 (-)
AMCG00015761 herc3 other downstream 7707111 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 8005198 19974956 ~ 19981557 (-)
AMCG00015891 wdr17 other upstream 43886 28041563 ~ 28069876 (-)
G101456 NA other upstream 164160 28161837 ~ 28257732 (-)
G101540 NA other upstream 1106552 29104229 ~ 29106160 (-)
AMCG00015936 med28,LOC107702388 other upstream 2165596 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 2396374 30394051 ~ 30396307 (-)

Expression


Co-expression Network