AMCG00015903 (LOC106610173)


Basic Information

Item Value
gene id AMCG00015903
gene name LOC106610173
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28618576 ~ 28632799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015903
GTCTCCAGTCATGGCGGGGGGGCTCTTTGCAGTGTGGATGTGTGGGGGCAGCATGTACGACGTCCCCTGCTCCAGAGTCGGACACATCTACAGGAAGTACGTCCCTTACAAAAATCTGAAGCGGGTGGCAGAGACGTGGATGGACGAATTCACAGAGTACATTTACCAGAGGCGGCCGGAGTACCGACACCTCTCCACCGGAGACCTGACGGCGCAGAAGGAGCTGCGCAAACACCTCAAGTGCAAGGACTTCAAGTGGTACATGGCTGCGGTGGCCTGGGACATCCCCAGATATTACCCCCCGGTGGAGCCCCTGCCAGCAGCCTGGGGAGAGATCCGGAGCGTGGCCTCCAGCCTGTGTATCGACAGCAAGCACGGAGGAACGGGCATCGAGCTGCGACTGGATGTGTGTATGAAGGACGGGTCAGAGCGCACCTGGTCACATGAGCAGATCTTCACGTTCGGCTGGAGAGAAGACATCAGGCCCGGAGATCCGCTTCACACCCGCAAATTCTGCTTCGACGCCATCTCTCACAGCAGCCCGGTGACGCTGTACGACTGCCACGGCATGAAGGGCAACCAGCACTGGCGCTACCGGAAGGATAAATCTTTATATCACCTCGTGAGCAACAGCTGCATAGACTGCAGCCCAGGCGATAAGAAGATTTTCATGAACAAATGTAACCCTCTGTCTGAGACGCAGCAGTGGATTTTCCAGCACATAAACGCCACCGTCCTGGACAAATTCAACAGCCCTGCCAACTCC

Function

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase-like 6

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015903 True 766 mRNA 0.57 6 28618576 28632799

Neighbor

gene id symbol gene type direction distance location
AMCG00015904 galnt7 coding downstream 10126 28590771 ~ 28608450 (-)
AMCG00015898 NA coding downstream 188085 28421004 ~ 28430491 (-)
AMCG00015899 NA coding downstream 197923 28420035 ~ 28420653 (-)
AMCG00015888 NA coding downstream 769782 27841123 ~ 27848794 (-)
AMCG00015885 zgc:153720,LOC107552026,LOC107670970,LOC107748832 coding downstream 1650215 26952466 ~ 26968361 (-)
AMCG00015905 galntl6,si:ch211-15e22.3,LOC107670789 coding upstream 13532 28646331 ~ 28655271 (-)
AMCG00015906 si:ch211-15e22.3,galntl6,LOC107734540,LOC107598754,LOC106610159,LOC107676688 coding upstream 123296 28756095 ~ 28777061 (-)
AMCG00015907 NA coding upstream 231061 28863860 ~ 28870244 (-)
AMCG00015909 NA coding upstream 487178 29119977 ~ 29127756 (-)
AMCG00015910 NA coding upstream 503620 29136419 ~ 29144911 (-)
G101388 NA non-coding downstream 948821 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 1848308 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 2043366 26574385 ~ 26575210 (-)
G101317 NA non-coding downstream 2044289 26574066 ~ 26574287 (-)
G101309 NA non-coding downstream 2092846 26523659 ~ 26525730 (-)
G101571 NA non-coding upstream 575498 29208297 ~ 29269160 (-)
G101660 NA non-coding upstream 948050 29580849 ~ 29638632 (-)
G101728 NA non-coding upstream 1342594 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 1703288 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 2113770 30746569 ~ 30746808 (-)
G101456 NA other downstream 360844 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 548700 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 620899 27986755 ~ 27997677 (-)
G101067 NA other downstream 3617686 24992953 ~ 25000890 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other downstream 4871873 23743790 ~ 23746703 (-)
G101540 NA other upstream 471430 29104229 ~ 29106160 (-)
AMCG00015936 med28,LOC107702388 other upstream 1530474 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 1761252 30394051 ~ 30396307 (-)
G101853 NA other upstream 2008395 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 2385812 31018611 ~ 31085062 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038665 GALNT10 coding NW_008805563.1 KN150614.1 286 ~ 5359 (+)
mexican tetra (Astyanax mexicanus) G123791 galnt10,LOC103022003,LOC100711410,LOC106603494 unknown NC_035910.1 CM008313.1 22289324 ~ 22299730 (-)