AMCG00015927 (slit2,LOC107700301,LOC107695646)


Basic Information

Item Value
gene id AMCG00015927
gene name slit2,LOC107700301,LOC107695646
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29776779 ~ 29826448 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015927
AATGGCTGCCCGGCTCGGCGGGGCTGGCACAGTCCTTCGCTGCGGGGAGCTTCTGTAGCGCGTAGTGCTGCCCGGCGCCCGTCTCTCCTTCTCATTTATCCACCTAATCTGTTTAACAGGCAACTGGATTACAACCAGATCAGCTGTATCGAGGATGGAGCTTTCCGAGCCCTGCGTGACCTGGAAGTGCTCAccctcaacaacaacaacctcaCCCGTCTGTCCGTGGCCAGCTTCAACCACATGCCCAAACTGCGCACCTTCCGCCTGCACTCCAACAGCCTGTACTGCGACTGCAACGTGGCCTGGCTCTCGGATTGGCTGCGCCAGAGGCCGCGCGTGGGGCTCTACACGCAGTGCATGGCACCCTCCCACCTGAGGGGCCACAACGTAGCCGAGGTGCAGAAGAAGGAATTTGTGTGCTCAGGTCATCACTCCCCGCAGTCCTGCAGCGTCCTGCAGTGTCCGGACTCCTGCACCTGCAGCAACAACATCGTGGACTGTCGCGGAAAAGGCCTGACCGATATCCCGACCAACCTGCCGGAAACCATCACGGAAATCCGTTTGGAGCAGAACGCCATCAAAGCCATCCCCCCTGGCGCTTTCTCCTCCTACAAGAAGCTGAGACGCATAGACCTGAGTAATAACCAGATTTCAGAAGTGGCTCCAGACGCTTTCCAGGGCCTTCGCTCCCTCAACTCCCTgGTGCTGTATGGGAACAAGATCACGGAGCTGCCCAAGGGCCTCTTCGAGGGACTCTTCGCCCTGCAGTTACTGCTCCTTAACGCGAACAAGATTAACTGCCTGCGTGTCGATGCCTTTCAAGACCTGCACAACCTCAACCTGCTCTCTCTCTACGACAACAAACTCCAGACTATCGCCAAGGGGACGTTCGCGTCTCTCCGGGCCATCCAGACCCTGCACTTGGCCCAGAACCCGTTTATCTGCGACTGCCATCTGAAGTGGTTGGCCGACTATCTGCACGAGAATCCCATCGAGACCAGCGGCGCTCGATGCACCAGCCCCCGCCGGCTGGCCAACAAGAGGATTGGCCAAATTAAGAGCAAGAAGTTCAGATGCTCAGGCACGGAGGACTACCGGTCCAAGCTGGGTGGCGATTGCTTTGCGGACCTGGCCTGTCCCGAGAAGTGCCGCTGCGAGGGGACCACGGTGGACTGCTCCAATCAGAAGCTCACCAAGATCCCAGATCACATCCCCCAGTACACAGCCGAGCTGCGGCTCAACAACAACGAGTTCACGGTCCTCGAAGCGACGGGGATATTCAAAAAACTGCCCCAGCTCCGCAAAATAAACCTGAGCAATAACAAGATCACCGACATCGAGGAGGGGGCTTTCGAAGGGGCGGCCGGCGTCAACGAGCTTATCCTGACGAGCAACCGTTTGGAAAACATTCACTCCCGGATGCTGAAGGGACTCAACGGCCTGCGCACGCTGATGCTGAGGAGCAATCGGATCAACTGCGTGGGAAACAGCAGCTTCACTGGCCTGAGCTCGGTGCGGCTTCTCTCCCTCTACGACAACCAGGTCACCTCCATGGCCCCCGGCGCCTTCGACACCCTGCACTCACTGTCCACTCTGAATCTCCTCGCCAATCCCTTCAACTGTAACTGCCACCTGGCCTGGCTGGGCGAGTGGCTGAGGAAGAAGAGGATTGTCACGGGGAATCCCAGGTGCCAGAACCCCTACTTCCTGAAGGAGATCCCCATCCAGGACGTGGCCATCCAGGACTTCACCTGCGATGACGGCAATGACGAGAACAGCTGTTCCCCGCTGGCCCGCTGCCCCGCCGAGTGCACCTGCCTGGACACTGTGGTGCGCTGCAGCAACAAGGGGCTCAAAGCGCTGCCCAGGGGGCTGCCCAAGGAAGTGACCGAGCTGTATCTGGATGGAAACCAGTTCACCCAGGTCCCAAGGGAACTCTCTAATTATAAGCACTTAACTCTCATCGACTTAAGTAACAACCAGATCAGCACTCTGTCCAACCAGAGTTTCAGCAACATGACCGAGCTGCTGACACTAATCTTAAGCTACAACCGACTACGGTGCATACCAGTCAAGGCTTTCGATGGGCTTAAGTCTCTACGGCTGTTGGCCCTCGGTGCCAACCCGCTATACTGTGACTGCAACATGCAGTGGCTGTCTGAGTGGGTCAAGTCGGGCTATAAGGAGCCGGGCATCGCTCGCTGCGCCGGACCCGGAGAAATGACGGACAAACTGCTGCTCACCACGCCCTCCAAGAAGTTCACCTGCCAAGGCCCTGTGGATGTCAGCATCCTTGCCAAGTGTAACCCGTGTCTGTCGAACCCATGCAAAAATGACGGCACATGCAACAATGACCCGGTCGACTTCTACAGATGCACCTGCCCGTACGGCTTTAAGCAACCCCTGCGGCAACGGAGGCACGTGTCATTtgaaagagggggagaaagaTGGGTTTTGGACAATGACTGCGAGAACAACTCCACCTGCATCGACGGCATCAACAACTACACCTGTCTGTGCCCCCCCGAATACACAGGTGAGCTGTGCGAGGAGAAGCTGGACTTCTGTGCCCCCGACGTCAATCCCTGTCAGCATGACTCCAAGTGCATCTTGACAGCCAAGGGATACAAATGTGAATGCACGCCTGGCTACGTGGGGGAGCACTGCGACGTTGACTTTGACGACTGCCAGGAAAACAAGTGCAAGAATGGAGCCCAGTGTATCGATGCGGTGAACGGCTATACCTGCGTGTGTTCCGAAGGCTACAGCGGCCTGTTCTGCGAGTTCTCCCCGCCCATGGTCCTGCCCCGCACCAGCCCGTGCGACAACTACGAGTGCCAGAACGGGGCGCAGTGCTTCGTGAGGGACACGGACCCCGAGTGCCAGTGTCTGCAGGGCTACCAGGGGGAGAAGTGTGAGAAGCTGGTTAGCCTGAACTTCGTGGACAAAACATCCTTCCTGCAAGTCCCTTCCTCCCTGATTGATTCACAGGCCAACATCTCCTTGCAGATCGCCACGGACGAAGACAGTGGGATCCTGCTGTACAAAGGGGACAAGGACCACATCGCGGTCGAGCTGCACCGGGGGCGGCTACGCGTCAGCTACGACACAGGGTCCTACCCGCCCTCTGCCATTTATAGCGCAGAGACGATCAACGACGGGAACTTCCACGTGGTGGAGCTGGTGGCCTTCGAgcagtctctctccctgtccatCGACGGGGGCAGCCCCAAGACCATCAGCACGCTGGCCAGGCAGTCCACTCTGAGCGTCGACTCCCCGCTCTACATCGGAGGGATGCCGGTGAAGAGCAGCGTGGCGGCGCTGCGCCAGGGCCCGGGGCAGAACGGCACCAGCTTCCACGGCTGCATCCGCAACCTGTACATCAACAACCAGCTGCAGGACTTCAGCCGCTTCCAGCTGCAGACGGGCATCCTGCCGGGGTGTGAGCCGTGCCAGAAGAAGGTGTGCGGTGCCCACGGGAGCTGCCTGGCCACGGGGCAGTCCACCTTCAGCTGCGAGTGCGAGGGCGGCTGGACGGGGGCGCTGTGCGACCAGCAGACCAACGACCCCTGCCAGGGCAACAAGTGCATCCGCGGGACCTGCCTGCCCATCAACGCCTTCTCGTACAGCTGCAAGTGCCAGAGCGGCTTCGGGGGCGTCCTGTGCGACGAAGAGGAGGACCTCTTCAATCCCTGCCAGTCCCTCAAGTGCAAGCATGGCAAGTGCCGGCTGTCGGGCCTGGGCAAGCCGTACTGCGAGTGCAACAGCGGCTACACGGGAGACAGCTGTGACAGAGAAATCTTTTGTCGAGGGGAACGGGTCCGAGATAACTACCAGAAGCAGCAGGGGTACGCCGCGTGCCAGACTACCAAAAAAGTCTCGCGGTTAGAGTGTCGAGGCAGCTGCGACAGCGGACAGTGCTGTGGGCCGCTGAGGAGCAAGAGGCGGAAATACACGTTCGAGTGCACGGATGGCTCTTCGTTCGTGGAGGAAGTGGAAAAAGTTGTCAAGTGTGGCTGTACAAAATGTcctttgtaatttttattttattttttggttacATGTCCCTTTttgtaaggaaaaacaaaacaacatcaacaacaaacaacaaaagtaCCTTCTGACCGTGCTGGACTAATTAATGCTTCCATAGTGGAAATGTtgaattatattgtaaaatacagaacagacttattttttattatcgagaggagaggaaaaaaagaaagaaaaaaaaaaagcagtcgACTATATTCTTTATTTGCTATTTCTCCGGGAGGTTGGAccgttttccttttctttccgatttttttcttttttcaagaaCTGACGGCTTGTTTATCGCAGgtgaagaaattaagaaaattggcaggtcactttttttttcctttcctttctatttcagttttttatgattttagaATTTTACATGTCACGTGACTTTGGTTACTGTACAATGACGAACagattcacttttttttttttttttaattgtggcaTACGGATTCGGATTCCGAGAGCGACTGGACGCGCAGAGAGACGTCAGATGATGGTGGTTTCACAAAACACCTTCTACCTTCTCGACAAGAAAATGGCCGTGAGATCTGCGGAGGACTGTGCCGGAGAAATCTTGCGTTGAGATGCAGAATCCTCAGTCTCTGAAAGCCCTGATCTGTTGTTGGCCACAAACTGCCAGATAACAGCTTGGTGTAAATGAACATCAAATACAACTTTAATGTTACCTGCACATATCAATGCTACAATAGTGGAACCCTTCGATATTTAGCGAGCCTCATTTCcagtattaatattttgtaatttaaatgttaaaggggtggggtggggggggtgcgtGGGTAATTAAGTCTAGATTAATAATGTACGGTTAGTAATTTGGTTAAAACGAAACGTCTTGTCCGTATTCTTTTCTGACTGTTGGCGCAGTATTCAAAAATATCACTGACAAGTATTTATTGCATCGGAAGTACCTTTACTTATTCACTAGACCTTCCCTTATACTACAGTTTGAgccttttaatatatattaatttatatttgtcctgatatttttgtattaaaaataaataaaattaatcaggATCGGTTGGGATAGATTAACTAACATAGCATGTCCCGTTTagatgaaattattattttctctttagcGCTATATTTGACCACTGATATTGTTGGATTTTCCtgaaaagttacattttaaccTTTACGGTGttaaatgcaacaaaacattgtatatttttgtcaaaTCTCCTGAGAATTTGTACTGTGCCAGAAATAAAGGTCTTTATACTAGAATATAATTGAAATAGAGAACTTTTTCCCTACATATTTTACAAAGATTAAATGGTGTTTAGAAAAATTATCCTAGGAAAAAGAATAGATTTCTTTTTACGAACATGTTTTTCCTCGGAGTTCCTTACCTTTTTAACAAATTATGCTAAGAAAACTGTgacttttttctaaataaaactaCTTTGTTATCCCCATGTTTCCAATGTTAACATGTTGCTGCTAAATTTGTAATGTAGATTTGGATGATAATATGTATGGTAGTGGATTGTGCTCtcccttcattaaaaaaagggcACTCTATATaacaaagattttgttttcttgacttttttatgaaaaaaaacaggcaaactaGGTGTCCATGTTcaatgcattgtgttgtgtctCACCTGGACTAATATCAGTCTTGTCACTGatgtttgtaaattaaacagGATATTTACTTCA

Function

symbol description
slit2 Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within endocardial progenitor cell migration to the midline involved in heart field formation; generation of neurons; and morphogenesis of a branching structure. Predicted to be located in extracellular region. Is expressed in several structures, including axial mesoderm; forebrain neural tube; hypochord; nervous system; and neural plate. Orthologous to human SLIT2 (slit guidance ligand 2).

NR:

description
slit homolog 2 protein precursor

GO:

id name namespace
GO:0001763 morphogenesis of a branching structure biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06839 SLIT2; slit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015927 True 5763 mRNA 0.51 30 29776779 29826448

Neighbor

gene id symbol gene type direction distance location
AMCG00015926 NA coding downstream 7354 29765408 ~ 29769425 (-)
AMCG00015923 ppm1k coding downstream 53832 29705975 ~ 29722947 (-)
AMCG00015924 NA coding downstream 80090 29680683 ~ 29696689 (-)
AMCG00015925 NA coding downstream 96700 29675557 ~ 29680079 (-)
AMCG00015920 uso1 coding downstream 157056 29594164 ~ 29619723 (-)
AMCG00015934 NA coding upstream 286109 30112557 ~ 30124600 (-)
AMCG00015933 NA coding upstream 324241 30150689 ~ 30161616 (-)
AMCG00015935 LOC107550873,LOC107756464,LOC107680669,LOC107694980,LOC107601489 coding upstream 342263 30168711 ~ 30175061 (-)
AMCG00015939 LOC107591586,LOC104943831 coding upstream 528068 30354516 ~ 30364976 (-)
AMCG00015943 ndst3,LOC105903540,LOC107551574,LOC107754165,LOC107750457 coding upstream 573928 30400376 ~ 30419717 (-)
G101660 NA non-coding downstream 138147 29580849 ~ 29638632 (-)
G101571 NA non-coding downstream 507619 29208297 ~ 29269160 (-)
G101388 NA non-coding downstream 2107024 27669432 ~ 27669755 (-)
G101369 NA non-coding downstream 3006511 26768207 ~ 26770268 (-)
G101318 NA non-coding downstream 3201569 26574385 ~ 26575210 (-)
G101728 NA non-coding upstream 148945 29975393 ~ 29975724 (-)
G101828 NA non-coding upstream 509639 30336087 ~ 30339728 (-)
G101855 NA non-coding upstream 920121 30746569 ~ 30746808 (-)
G101859 NA non-coding upstream 928439 30754887 ~ 30760424 (-)
G101911 NA non-coding upstream 1065880 30892328 ~ 30970887 (-)
G101540 NA other downstream 670619 29104229 ~ 29106160 (-)
G101456 NA other downstream 1519047 28161837 ~ 28257732 (-)
AMCG00015891 wdr17 other downstream 1706903 28041563 ~ 28069876 (-)
AMCG00015892 spcs3,LOC106602378 other downstream 1779102 27986755 ~ 27997677 (-)
G101067 NA other downstream 4775889 24992953 ~ 25000890 (-)
AMCG00015936 med28,LOC107702388 other upstream 336825 30163273 ~ 30168350 (-)
AMCG00015942 NA other upstream 567603 30394051 ~ 30396307 (-)
G101853 NA other upstream 814746 30641194 ~ 30724429 (-)
AMCG00015950 tll1,LOC107745060 other upstream 1192163 31018611 ~ 31085062 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other upstream 1344991 31171439 ~ 31193425 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001230 NA non-coding NC_007112.7 CM002885.2 23908717 ~ 23911006 (-)