XLOC_001230


Basic Information

Item Value
gene id XLOC_001230
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23908717 ~ 23911006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003415
ttttttttttTAAAGGGAGGGGACATCTTTATTCATTGATCAGTAAAACAATTTGCTCAATGAATGAGCAACGTCCTCTACAATAAACATCAGCATCATCATCCAAAGTCTACAATACCAATTTAGCAGCAACATGTTAACATGGGGGAGACAGAGTGGTAACAAAGTAGTatcatttagaaaaaaagtcaCAGTTTTTCTTTCTATTTGTTTCGTTAAAAAGGATTTGCAAGGAGGATATTTTAAAAAGAGCTTTATTGACAGCTATGGACGCTActgttattttcattattattattatttttttaactaggGCATGTGCTCTATACAGAATACAAGGGGAGATTTTAACTATACATTTAAACTCTAATATAAAGCACGTCTGTGTCACCATACAAATTTTAGGAGATTTGACAAAAATATACAATGTTTTCACTTCACATTTGAAGATTCAGAACACCactaagttatttatttattaactttttttttttttttagaattttcttttttatgtatttttttgcttttttcacTGTAAATACAACAGTCCCATTGGTCAAACCAACCAACCGAAGGAGACACAACGTTAGTTTTCTACTCAATAAGCTATGAGTGATTTAAATCGGTAAGAGGAcgaatataaattaatatatattaagaaATTCCAACTGTAACTCCAGGGAACCAAGGGCTATACTGAGTATAAGTAATGTGACagtatttttgatacaataaataCACATGGTTTATAATGCGGATCagaaaagagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgcatgctggaAGAGACCATGGGTGTATACTTAGTAgggatggtgtgtgtgtgtaagagaaagCAGCTATgatagtgtgtttgtgtggtgtaaGGAAGTAAGATGGGAATCCTCCGCTCTCAGTGAATCCCCTTGCAGCCTCCATAATGATACTTTATCTCACCTTCACAAAGTCCAGGTGAAATGAGTTACGGCAGTCcagaaaatcacaaaaaaagaatGGCACATAgaatgacacacacaaaaaagaaacatGTCGTCAGGGTGTGTTTGCTTTCCATTCTTATTTGAGGTGATtttgcccaaaaaaaaaaaaaaaggtaatgaaAACGTCACAGTACCTAAGATGGCAAATAAAAAACCTCTAAAATctattttttgtccttttttctcAGCTTCATAATAAAAAATAGGTTCTTTATCTTACAGTAATCCATTATCTCCTTTGAAGGAAAAAAACATTAGTCCAAcactgacaaaaacaaaacaggggACTTCAAACAAGGGGAGGGTGAGgatgtatttttg

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003415 True 1334 lncRNA 0.34 2 23908717 23911006

Neighbor

gene id symbol gene type direction distance location
XLOC_001229 NA coding downstream 124948 23751953 ~ 23783769 (-)
XLOC_001228 si:dkeyp-26a9.7 coding downstream 310043 23596731 ~ 23598674 (-)
XLOC_001227 lcorl coding downstream 312326 23573224 ~ 23596391 (-)
XLOC_001226 fam184b coding downstream 350840 23506525 ~ 23557877 (-)
XLOC_001225 NA coding downstream 461417 23445485 ~ 23447300 (-)
XLOC_001231 lrba coding upstream 8412 23919418 ~ 24349789 (-)
XLOC_001232 sh3d19 coding upstream 465692 24376698 ~ 24462691 (-)
XLOC_001233 gatb coding upstream 609497 24520503 ~ 24558838 (-)
XLOC_001234 NA coding upstream 691326 24602332 ~ 24606762 (-)
XLOC_001235 BX511127.1 coding upstream 914141 24825147 ~ 24825263 (-)
XLOC_001224 NA non-coding downstream 472109 23416915 ~ 23436608 (-)
XLOC_001211 FP245458.1 non-coding downstream 1234104 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 1716650 22191952 ~ 22192067 (-)
XLOC_001242 AL935184.2 non-coding upstream 1644719 25555725 ~ 25558287 (-)
XLOC_001245 NA non-coding upstream 1798306 25709312 ~ 25714494 (-)
XLOC_001247 CU929073.1 non-coding upstream 1951960 25862966 ~ 25863639 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015927 slit2,LOC107700301,LOC107695646 coding CM030132.1 CM030132.1 29776779 ~ 29826448 (-)