Fish Transcriptome and Expression Database

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model fish

XLOC_001205 (CR388092.1)

Basic Information

Item	Value
gene id	XLOC_001205
gene name	CR388092.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	22191952 ~ 22192067 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001929
tctttttgctttattatttttgaCAACTGGTCAATAAAAACACTAAACTAAGCAGGGtagagcctggtcagtacctggatgggaggctACAgagaaaaactaggttgctgttagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107258

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00001929	True	116	rRNA	0.39	1	22191952	22192067

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_001204	NA	coding	downstream	190902	21999781 ~ 22001050 (-)
XLOC_001203	frmpd1a	coding	downstream	282344	21904955 ~ 21909608 (-)
XLOC_001202	frmpd1a	coding	downstream	290363	21893289 ~ 21901589 (-)
XLOC_001201	melk	coding	downstream	310134	21861387 ~ 21881818 (-)
XLOC_001200	si:ch211-134c9.2	coding	downstream	468592	21721651 ~ 21723360 (-)
XLOC_001206	si:ch73-380n15.2	coding	upstream	44422	22236489 ~ 22370660 (-)
XLOC_001207	chrnb3a	coding	upstream	196732	22388799 ~ 22412042 (-)
XLOC_001208	chrna6	coding	upstream	289656	22481723 ~ 22512136 (-)
XLOC_001209	chrnb5a	coding	upstream	350390	22542457 ~ 22594338 (-)
XLOC_001210	uchl1	coding	upstream	455689	22647756 ~ 22652424 (-)
XLOC_001199	CR786570.1	non-coding	downstream	511474	21680364 ~ 21680478 (-)
XLOC_001189	BX323083.5	non-coding	downstream	1176022	21010689 ~ 21015930 (-)
XLOC_001188	BX323083.2	non-coding	downstream	1186019	21000784 ~ 21005933 (-)
XLOC_001187	BX323083.3	non-coding	downstream	1195926	20990877 ~ 20996026 (-)
XLOC_001211	FP245458.1	non-coding	upstream	471656	22663723 ~ 22674613 (-)
XLOC_001224	NA	non-coding	upstream	1224848	23416915 ~ 23436608 (-)
XLOC_001225	NA	non-coding	upstream	1253418	23445485 ~ 23447300 (-)
XLOC_001229	NA	non-coding	upstream	1559886	23751953 ~ 23783769 (-)
XLOC_001230	NA	non-coding	upstream	1716650	23908717 ~ 23911006 (-)

Expression

Co-expression Network