XLOC_001229


Basic Information

Item Value
gene id XLOC_001229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23751953 ~ 23783769 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003414
CGGGAGCAGCTCCACCCCTCGATCCGCCCTGCTGGCCGCATAACCGTCTGCCTTCTACGGCACCGCCGCTCCTGGGACACGAACAGCTATCACGAGCAGCCTGCAGAAGGTAGCCGATGCGCAAATGACGCACAGAGAGCCTCTGACACACGCTCTGTATTTTGATTGTGAAAGGAGTAAATGGTAATTGCAGGGAAAGTTTTGAAACGGTCCTAAACAATTTAAGCTGTTTTGAGAAGATTGCAGATGAGTATCTACAGATCTGAATTTAGATTGCAGTTAACAAGAACAGGAACCAAAACCAGATCGAGGTGGAGAGTTTTGCCTGGGAGATAGAAGCCAGCAGAATTATGACCTCAATCAACTCCACAGTATGCACCTGCAGGggCGGATAAACAGAAAGACCTATTGGTACCTCTCTACCATCAGAGCACATCCAGACACACAGACTgtcccagacacacacacacaaagtgcagAAGTGAAGTGGGCACCCCAGACTGTTATATTCAGCCCATTGAAAGCTGCCTGGAGTATTACACAACCAAAAGCAGGGATCACGGAgaaaggaaacaaaaaaaaaaagactgctaaagaaagaaagaaaaacgaacaaagaaagaaagaaagaaagaaagaggagttttaagtaaataatattaattgtgcCTTTGCTTCATGTTTTTATGTGCAAAAATGAGTACAgtaattgtgtttgtgtgtatgtgtgtgcatacaaATATACATGTGATGAGTCTGATCGGTAAGAATGAATGGTATTGCTGATTGTTTAGGGAGGCCCAGAGCGGTAGCCAATAATAATCCTGCATTTGAATGAACAGCTTTTTTCCCTCCCTGGAATTTTTGTGTCTCTTCCACCATCCCTATTCACACCCTTTACTGTACATAATAGAAACAACAGAATAACATCGAAAGAAGAAGAAAAGGGAGGAGAAAGGCACTCTAAAGTGGCTTAGGTCTATCTATGCTATTTGTCAATTGAAACTGAGGCAAGCTGaatgcctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcacgcATGCTTGTACAAGACTGCGTGAAGCATTTCTGTGTAGCCACATGGCAGATGGGGGCatgaatgtgagtgtgtttgtttctCCCTGCGTGTGTTTTTCTGCATGTGTAACAGATGGTTAGTTGTGGTATGCGTGTTGCACTTGATGTACTCAATAGCAAGCTGGACAGTGTCCAGTGGATTTTGAATACAGTACACAATACTGTCTGACTGATGAAAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003414 True 1358 lncRNA 0.44 2 23751953 23783769

Neighbor

gene id symbol gene type direction distance location
XLOC_001228 si:dkeyp-26a9.7 coding downstream 153279 23596731 ~ 23598674 (-)
XLOC_001227 lcorl coding downstream 155562 23573224 ~ 23596391 (-)
XLOC_001226 fam184b coding downstream 194076 23506525 ~ 23557877 (-)
XLOC_001225 NA coding downstream 304653 23445485 ~ 23447300 (-)
XLOC_001224 NA coding downstream 315345 23416915 ~ 23436608 (-)
XLOC_001230 NA coding upstream 124948 23908717 ~ 23911006 (-)
XLOC_001231 lrba coding upstream 135649 23919418 ~ 24349789 (-)
XLOC_001232 sh3d19 coding upstream 592929 24376698 ~ 24462691 (-)
XLOC_001233 gatb coding upstream 736734 24520503 ~ 24558838 (-)
XLOC_001234 NA coding upstream 818563 24602332 ~ 24606762 (-)
XLOC_001211 FP245458.1 non-coding downstream 1077340 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 1559886 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 1750903 21999781 ~ 22001050 (-)
XLOC_001235 BX511127.1 non-coding upstream 1041378 24825147 ~ 24825263 (-)
XLOC_001242 AL935184.2 non-coding upstream 1771956 25555725 ~ 25558287 (-)
XLOC_001245 NA non-coding upstream 1925543 25709312 ~ 25714494 (-)

Expression


Co-expression Network