XLOC_001233 (gatb)


Basic Information

Item Value
gene id XLOC_001233
gene name gatb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24520503 ~ 24558838 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001995
TAGCAGTACTTTGGGAGCTCTGCATAACTTTAATGCTGAGACCAAATTAAATTGCATACAAATGCACTACTGGTATAGAGATTTCCtcctttaaagtgttttttttttattaccaacCACATAACCGATGACATGTCTTTGCGGAAACAGTTTAATCAATAAAGACAGATTGTTAGAATAAAGTTTAACTGCAATCCTGATCATAATCGCAcatgcagtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagagagagagagagacttgagTGCAGGTTCAAATCTTCTGCCAGAATAGGAAGCATCTTGAGGGACCATATATTAAGATGCTATACTGTTAAGGGTTCATGCACATCCAAAACACTGAACACTTAGAGAGCCAACGTATCTAGCtgtaataacaaaaacattccaGTTTCCAGAGTAAATATCTGCAAACAGACCATGTGTGTTGCAAAACACTTTACTGTGATGCAAAAACACTACACAGTACAAAGTAACGTTGTCCAGAACagctttggtaaaataatttggaaaataaaagaaaacaactaTAAAACTTTAGCTGCTTACAGTAGGAAAATGTGCAAACAAGTTTCTTGCattcagatttttaaaagatCAACCTAAAACAGAGTAGAGTGTCCACCTGTAGATTAAACGAAGAAAACTAGGACCTTTAGGAGCACGGTGATTTTAGGGGGGTTTTAAGGAACTCGGTATCAGCTCCATCTGTTATAAACTATTCAGTAACGATCGTCTTTGTCTAAAATACATCATCCACATCAGTCCTTGTATTCAGTGTATTTCTTAGCTGATCCGTGAACTTTGCTAGCTGGGTACTTGAGTCGGTTTAATGCCATTTTGCGCAGGACAGCTCGAGGTAAATCAACGTGGCATTTCTCGGCCAGTTCAACCAGATAGATCAAAACGTCGCTGAGTTCCTGGGCCAGATGCTCCCGCTCCGGTTCGGTCCAGTCAGGTAGACCCTCCGCCACCTCCCCACGCCACTGGAATAGCTCCGACACCTCGCCGACCTCTCCTACCAGAGCCAGAAGCAGGTTCCGCGGCTGGTGAAACTGGTTCCAGTTCCTCTCGTCCGTGAACTCAGCCTGCATGCGGCGGATGTCTTCAAGTGTTGGTTCGGAGGTGAAAGTGAACCGATCAGCGTGTTCGTGCTCGGCTTCTTCCTTTCCGTTTGTAGAGGGGTGATGATCGCTAGTTTCGCCGTTGTGTTTGGCCAGTTTGGAAGCGGTGCCGTTGTGCTGCAGTGCCATTGTTATTGAAATAAAAAGTCCTGACGATATAGAAGTGCCAAAAACTGATCGTTCATGTGCAGGACCATGCGTGAATCTCCCGCCACCAGCTGCCCCTCAGTTATGTATTCGCGGATTGTGAATGCCGTCATAAGTAACCGCCGGAAACTCCGCCGTTGCGCTTGTGGCATTGTGGGAGTTGAGTTTTTTCCTTATCATTCAGCAGCAGAGTTGCGAGTTTCTGAATGCTCCGTAAAACTACATGTCCCAGCTGCCCTCACATAAACACAAGCATGGCAGCCTCCACTTCAGGATACAGCGGTGTACTCTTCAGGCTGAGGAAATATGCTAATAAATCACAAAGTTTATGCCATATTGGTAATTCTAACTTCATAATAAGGACAACATGGACAACCGGATGCAAACATCAACATCAGCTAAATACACAGATTGAAAGTCTTCCTCAGATGGTCGGTGTTGTGGGTCTAGAAATCCATGCTCAGATTCACTCCAAATCAAAGCTCTTCTCTGGATCTCATGTTAGTTTCTCTGATCCACCAAACTCACTTGTCTCTCATTTTGATGCTTCATTACCAGGGACACTGCCAGTGCTGAACAGAAGATGTGTGGAGGCTGCTGTATTAACAGGCCTTGCTCTCAACTGCACCATAAACAAGAAGTCACTGTTCGATAGGAAGCATTACTTCTATGCAGACATGCCTgcagGTTACCAGATTACTCAGCAGAGGCTTCCCATTGCAGTAAATGGCACACTAAGCTATAGTCATTTTGAAGGTCGTAAAAGGAACCATGTGGTAACCAAGAGTGTGAAAATCAAACAGATCCAGCTTGAGCAAGACAGTGGAAAGAGTCTCCATGATGATGAACGGAGCCAGACTCTCATTGATCTTAACAGAGCAGGTGTGGGTCTGATGGAGCTGGTGATGGAGCCCGAGATGTGTTGTGGAGAGGAGGCAGGCGCTGCCGTCAGAGAGCTTCAGCTCATCCTGCAGGCTCTGGGCACCTGCCAGGCCAACATGGCTGAGGGCCAGCTTAGGGTTGATGCCAATGTGTCCGTGCATCATCCCGGAGAACCTCTGGGAGTGAGAACTGAGGTCAAAAACATCAACAGTGTGAGGCATCTGGCCAAAGCTATAGACTATGAGATCCAGAGACAGATGGAGGTTCTACAGAGCGGTGGGACGGTTCTTAATGAGACCCGGGCATTTGACAGCAAATCTGGTATCACAATTCCGATGAGGGATAAGGAAGGCCTGCAGGACTACAGGTTCATGCCAGAGCCCAACTTGCCACCACTGTTTGTGTATGAGAGTGAAGCCTCGGTGCCCGCTGGTGCTGACTCCACCCAGCTCGTGCTGATTGACAGGCTGAGCTCCCAGTTGCCAGAGCTGCCATCTGTGACCAGGACAAGGCTTGTGGAGACTTACGGCATCCTGAGAGAGCACAGCTTCACACTTGTGAATGAGGATGGCCTTGTGGATTACTTTGAGAGCGTTGTTAAGATGACTAAAACTGAACCAAGGAAGGTGATTGGCTGGGTGATGAATGAGCTGATGGGAAATCTCAATCTCCAGAATCTGAAAGTCTCTCAGAGTCCCGTCTCTCCATGTGCTCTCGCTGAGATGATCAATCTTGTAAGATCGGGTCACATCTCATCTTCAACTGCCAAGAaaGTTTTCCAGGAGATGTGGAAGACCCCTGAGAAGACAGTGGAACAGATAGTCAAGGAGCAGGATTTGTGGATGATAAATGACAAAGAAGAGCTGCGACAGATCTGCCAGAGGATTGTGGACAGTCACTCTGAGGAGGTTCAGATTATCAGAGGAGGTAATAAGAAAGTTCTGAACAAACTGATGGGGGAAATTCAGAAGGAAACCAAAGGCAAAACCAATCCGCTCCAAGTCAAAGCCATTCTGGAGGAAATGATCTTTTGAAGTACTTACAGTACCTCTCTTTAATAAATGGGATAGTTtggccaaaactgaaaattccttcactcacccttcacttgttacaaacctgtttaattttctttcttctattgaacacaaaacaagttattttgaaaaatgctgcagatgggtaaccattgacttccatggtattatTATAGTACTACTATCAAGTTAATAgttgccaacattcttcaaaatctcttcttttgtgttcatctgaAAAAAAGGAActctcaaaggtttggaaccatttgagagTGTATAAAAATGgagtacattttaaacatttggatgaactattcctttacacCTGTTCTCTGGACAAGAACCTTAATGCAGCAATTTGTCTCTGTAGCAtcattttaaaagatgtctattGCAGAGCTACACCGCCTGTTCAGATAGCATActaataaacaaatgtttcatgCAG
>TCONS_00001996
GCACCATAAACAAGAAGTCACTGTTCGATAGGAAGCATTACTTCTATGCAGACATGCCTgcagGTTACCAGATTACTCAGCAGAGGCTTCCCATTGCAGTAAATGGCACACTAAGCTATAGTCATTTTGAAGGTCGTAAAAGGAACCATGTGGTAACCAAGAGTGTGAAAATCAAACAGATCCAGCTTGAGCAAGACAGTGGAAAGAGTCTCCATGATGATGAACGGAGCCAGACTCTCATTGATCTTAACAGAGCAGGTGTGGGTCTGATGGAGCTGGTGATGGAGCCCGAGATGTGTTGTGGAGAGGAGGCAGGCGCTGCCGTCAGAGAGCTTCAGCTCATCCTGCAGGCTCTGGGCACCTGCCAGGCCAACATGGCTGGTGATTTAACACACCCCTACAGCTAGCATTGATCTGAACCTTAATGTCTGTACACATTTATTCCCCGGATTGGGACTCACACACATATCACCTTGTTGTaacaacatttttacatttgGTAATCCATCCAGTATTTATACTGTAAGTATGAGGAGTGT

Function

symbol description
gatb Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation biological_process
GO:0032543 mitochondrial translation biological_process
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko00970 Aminoacyl-tRNA biosynthesis
ko02060 Phosphotransferase system (PTS)
ko03029 Mitochondrial biogenesis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040724-131 Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).

Ensembl:

ensembl_id ENSDARG00000037309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001995 False 3697 mRNA 0.44 13 24520503 24558838
TCONS_00001996 True 539 lncRNA 0.46 3 24540418 24552267

Neighbor

gene id symbol gene type direction distance location
XLOC_001232 sh3d19 coding downstream 57812 24376698 ~ 24462691 (-)
XLOC_001231 lrba coding downstream 170714 23919418 ~ 24349789 (-)
XLOC_001230 NA coding downstream 609497 23908717 ~ 23911006 (-)
XLOC_001229 NA coding downstream 736734 23751953 ~ 23783769 (-)
XLOC_001228 si:dkeyp-26a9.7 coding downstream 921829 23596731 ~ 23598674 (-)
XLOC_001234 NA coding upstream 43494 24602332 ~ 24606762 (-)
XLOC_001235 BX511127.1 coding upstream 266309 24825147 ~ 24825263 (-)
XLOC_001236 fbxw7 coding upstream 311823 24870661 ~ 25144439 (-)
XLOC_001237 tmem154 coding upstream 595238 25154076 ~ 25177225 (-)
XLOC_001238 trim2a coding upstream 763607 25322445 ~ 25370281 (-)
XLOC_001225 NA non-coding downstream 1073203 23445485 ~ 23447300 (-)
XLOC_001224 NA non-coding downstream 1083895 23416915 ~ 23436608 (-)
XLOC_001211 FP245458.1 non-coding downstream 1845890 22663723 ~ 22674613 (-)
XLOC_001242 AL935184.2 non-coding upstream 996887 25555725 ~ 25558287 (-)
XLOC_001245 NA non-coding upstream 1150474 25709312 ~ 25714494 (-)
XLOC_001247 CU929073.1 non-coding upstream 1304128 25862966 ~ 25863639 (-)

Expression


Co-expression Network