XLOC_001234


Basic Information

Item Value
gene id XLOC_001234
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24602332 ~ 24606762 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002949
ACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaatacgatGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatcatctataaccaaattgtctttttttttttaaatacatagatatgtacagtatgtaagcattcctctaaaatcaatcagtgttgtaaattaagaccattattgtatgcctaactgcttacaac
>TCONS_00002948
ACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattaaatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaatacgatGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatcatctataaccaaattgtctttttttttttaaatacatagatatgtacagtatgtaagcattcctctaaaatcaatcagtgttgtaaattaagaccattattgtatgcctaactgcttacaac
>TCONS_00003416
gcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaacacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttcttacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgttttaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaggcagaaattttgcccgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaatagcttaatctaccacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaggtgtaaattataaggtgttcactgttcagatatgaatatttttttatttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATTTATATTAAATATCTACATTGTTTAGGCATATATGATTGTAtgagataaaatgcatttattctttcaCTACTATTGTAAGAACAGAAAGAAACGCGttagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatcaggTACAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTCCCTGTATCTGTAGACCTAGGTGACAGTGAGCTAGagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGTTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTAATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtatatgttaacCAGTTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACGATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTTGATTGCTTATCATTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattaaatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaatacgatGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatga
>TCONS_00002950
tataacggtcggcagcagggaagtgccgtaccgaaataagttcccactagattgtggatgcctttctttcactatcagagccgagatgagccgcgtcccccgagagcgcgtgcgcactccactcggagtttcgcatcctctcgagcgcgcgcacgcggcgcccctctaacagacttctgtagagctgcgggctgggtgacacccaacacatttgcaaggttttaccaacacgttctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacaaactttttaaaacctgatttacgcctattatcacagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgGGTTCTCAGATaagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0090085 regulation of protein deubiquitination biological_process
GO:0097124 cyclin A2-CDK2 complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002949 False 758 lncRNA 0.38 4 24602332 24603352
TCONS_00002948 False 834 lncRNA 0.37 3 24602332 24603352
TCONS_00003416 False 3248 lncRNA 0.33 1 24602559 24605806
TCONS_00002950 True 1191 lncRNA 0.42 3 24604431 24606762

Neighbor

gene id symbol gene type direction distance location
XLOC_001233 gatb coding downstream 43494 24520503 ~ 24558838 (-)
XLOC_001232 sh3d19 coding downstream 139641 24376698 ~ 24462691 (-)
XLOC_001231 lrba coding downstream 252543 23919418 ~ 24349789 (-)
XLOC_001230 NA coding downstream 691326 23908717 ~ 23911006 (-)
XLOC_001229 NA coding downstream 818563 23751953 ~ 23783769 (-)
XLOC_001235 BX511127.1 coding upstream 218385 24825147 ~ 24825263 (-)
XLOC_001236 fbxw7 coding upstream 263899 24870661 ~ 25144439 (-)
XLOC_001237 tmem154 coding upstream 547314 25154076 ~ 25177225 (-)
XLOC_001238 trim2a coding upstream 715683 25322445 ~ 25370281 (-)
XLOC_001239 fhdc1 coding upstream 792752 25399514 ~ 25438934 (-)
XLOC_001225 NA non-coding downstream 1155032 23445485 ~ 23447300 (-)
XLOC_001224 NA non-coding downstream 1165724 23416915 ~ 23436608 (-)
XLOC_001211 FP245458.1 non-coding downstream 1927719 22663723 ~ 22674613 (-)
XLOC_001242 AL935184.2 non-coding upstream 948963 25555725 ~ 25558287 (-)
XLOC_001245 NA non-coding upstream 1102550 25709312 ~ 25714494 (-)
XLOC_001247 CU929073.1 non-coding upstream 1256204 25862966 ~ 25863639 (-)
XLOC_001256 NA non-coding upstream 1576637 26183399 ~ 26185720 (-)

Expression


Co-expression Network