XLOC_001256


Basic Information

Item Value
gene id XLOC_001256
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26183399 ~ 26185720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003420
AATTGTCCAATCCCACGCAGCCATAGAAAGGTAAGCTTATTGAGCGCGAGCAACAAGTTCATATTTGCCGATAACAGGAGGCAGATCGTTTCCGAGGTTTCcgaaatttttattgttttatttcccaGACTCAAATCTTGTAAAGGTAGACAACACCGATATAATTACACAAAAACATTGACGACAAGGAAAACCTGGTCAGATCGCGCGAACAACTGGACTGTGAAGAGGATTACGTTAGTCAAAGCAGGCACGGGGAACAAAATAACTGGCAGCGAAAATACTTCTTGGTGATGTGTACAAAGATTTAATTGTGAAAAAGGGATGATTTCAAGAAGAGAGAAGACATACGGATGACCAGTAAAggaacaaagcaaaaaaataaataaaaaatggctgTTAAGGTTGCAAGTACTTCTCAAAGTTCAGCTATGTTTGCAATGGGGAAACAACTTAAAAGAGACCTCAAGAAGcgatacaaagaaaaaaaaaaaaaagctcctgtAATCTGAGATTGACTTGTTTCAAAACACAGAGTTGAGAAGATCAAGGAAAATAACCGTGGCATTGGATAGTGACAACAAGAAAATGATGGAGACAAGGTATTGGAGAACAGccttttgc
>TCONS_00003419
AATTGTCCAATCCCACGCAGCCATAGAAAGGTAAGCTTATTGAGCGCGAGCAACAAGTTCATATTTGCCGATAACAGGAGGCAGATCGTTTCCGAGGTTTCcgaaatttttattgttttatttcccaGACTCAAATCTTGTAAAGGTAGACAACACCGATATAATTACACAAAAACATTGACGACAAGGAAAACCTGGTCAGATCGCGCGAACAACTGGACTGTGAAGAGGATTACGTTAGTCAAAGCAGGCACGGGGAACAAAATAACTGGCAGCGAAAATACTTCTTGGTGATGTGTACAAAGATTTAATTGTGAAAAAGGGATGATTTCAAGAAGAGAGAAGACATACGGATGACCAGTAAAggaacaaagcaaaaaaataaataaaaaatggctgTTAAGGTTGCAAGTACTTCTCAAAGTTCAGCTATGTTTGCAATGGGGAAACAACTTAAAAGAGACCTCAAGAAGcgatacaaagaaaaaaaaaaaaaagctcctgtAATCTGAGATTGACTTGTTTCAAAACACAGAGTTGAGAAGATCAAGGAAAATAACCGTAAGTGGCATTGGATAGTGACAACAAGAAAATGATGGAGACAAGGTATTGGAGAACAGccttttgc
>TCONS_00002042
aGACTCAAATCTTGTAAAGGTAGACAACACCGATATAATTACACAAAAACATTGACGACAAGGAAAACCTGGTCAGATCGCGCGAACAACTGGACTGTGAAGAGGATTACGTTAGTCAAAGCAGGCACGGGGAACAAAATAACTGGCAGCGAAAATACTTCTTGGTGATGTGTACAAAGATTTAATTGTGAAAAAGGGATGATTTCAAGAAGAGAGAAGACATACGGATGACCAGTAAAggaacaaagcaaaaaaataaataaaaaatggctgTTAAGGTTGCAAGTACTTCTCAAAGTTCAGCTATGTTTGCAATGGGGAAACAACTTAAAAGAGACCTCAAGAAGcgatac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006364 rRNA processing biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000104309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003420 False 624 lncRNA 0.38 4 26183399 26185720
TCONS_00003419 False 628 lncRNA 0.38 4 26183399 26185720
TCONS_00002042 True 353 processed_transcript 0.38 3 26183739 26185594

Neighbor

gene id symbol gene type direction distance location
XLOC_001255 cdkn2a/b coding downstream 52311 26127818 ~ 26131088 (-)
XLOC_001254 pdcd4a coding downstream 111864 26046148 ~ 26071535 (-)
XLOC_001253 gpank1 coding downstream 137815 26036123 ~ 26045584 (-)
XLOC_001252 si:ch211-145b13.6 coding downstream 156062 26025292 ~ 26027337 (-)
XLOC_001251 si:ch211-145b13.5 coding downstream 159721 26011479 ~ 26023678 (-)
XLOC_001257 NA coding upstream 57785 26243505 ~ 26248287 (-)
XLOC_001258 cxxc4 coding upstream 65009 26250729 ~ 26294995 (-)
XLOC_001259 CU570873.1 coding upstream 164806 26350526 ~ 26350641 (-)
XLOC_001260 ppa2 coding upstream 203433 26389153 ~ 26398361 (-)
XLOC_001261 ints12 coding upstream 252877 26438597 ~ 26444075 (-)
XLOC_001247 CU929073.1 non-coding downstream 319760 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 468905 25709312 ~ 25714494 (-)
XLOC_001242 AL935184.2 non-coding downstream 625112 25555725 ~ 25558287 (-)
XLOC_001235 BX511127.1 non-coding downstream 1358136 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1576637 24602332 ~ 24606762 (-)
XLOC_001263 NA non-coding upstream 369160 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 387709 26573429 ~ 26575260 (-)
XLOC_001266 NA non-coding upstream 480038 26665758 ~ 26669757 (-)

Expression


Co-expression Network