XLOC_001245


Basic Information

Item Value
gene id XLOC_001245
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25709312 ~ 25714494 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003418
ATGGAGTACAGAAACCTAAAGTCAAATGAACGGCAATCTTGTAACTATGGGCCAAAAGGAAGATACAAGCCTAAAGAAAGAAAACAAGTCCAGATAAATGTAGGAGTGATGGTGCCACATGGAAGTGATTTAAAACCTCTAAGGGGGAAAACACTTCCCTTATTTACAGACCCCGACGTAGCAGCACCTGATCTGCTAAAACATGCTGTAGACAAAATAAGAACATTTAACAAGGACATGCCAGAAGGACTTTACGTACTTTTGTATCCAGACTGCTCAGAGGTGGACTATGTGCCTGGATCAGACAGGCCATTCAAATTGTCAGAATATAAAAAGGAAATTGGAAAGGCATATGCCAGGATCACTTTTTTCATTTGTCTAGAAAAACACTATAAAAGAGtggatgATACCTCAGACTCGGACTCCGACTCTGAAATTGTCATCACAACAAGGAGCACAGCTGAATTTAATCAAGCTGACACTTTGGTTTTTGAACCACAAAATCAAAGTACTCCCAAACTCGAAGATGAAAGAGATGCTCCTAGACATTCATCAACAATTCAGCCAGGACAGataacgATATCTGATGATGAGGATCTGGATCCACCTGAAACGGGTCCAGAAAATACTTCTTgctacagTAAATACACAGACCTATATTCACCAAATGTTGAGCAAGAAGACGAAGAGCCAGTTGCTGTCAATGGGAATAATTTCCAACACACAGCAATGGAGGAGACGGACATTACATTACCTGACATTGTAGCAAACCTGTCACTTCCTATTGATCATAAAATGGTCAGCCGGTTCAACATCTCAAGGGCTAATGTTTGGGATGGGGCTGTCAGAGGTTTCAAGCGTACAACATATTCTGAAACCTGTGACATGCTGGTCAAATTTACGGATGATACTGGTGTTCTGGAGGAGGGACTTGACACTGGAGGTCCAAGACGAGAGTTTTTAACTCTATTAATGAAACACCTTAAAGACCGGCCCATTTTTGATGGACCAGAAGGACATCGATTCTTGGCCTACAATGCAAACGCTGTTAGGGAGGATGAATACTACCTGGCAGGAAAGATGATTGCTGTGTCAGTTGTGCATGGAGGTCCAGGACCCCATTTCCTATCAAAAGATCTTGTACATTACCTTGCAGGCCAGCCTTCATTCAAAGCACCAATTAATGTAATAACTGATGCAGAAATAAGTAAAGCTTTGCAAGAGATTGAGAATGCTGCTTCATTGGATTCTCTGCACGAATGTATGATGAGACACAGCACAATGTTACAGACAGCAGGTTGTCTGAGACAAGTGGCTACTGTGGAGGAAAAGAGAGAAATAGTTTCAGACTACCTCAAATGGTATGTTATTGACCGCAACGCATCTGTAATTGACAGATTCCGGGAGGGTCTTTCAACTCTGGAGTTTTTGACTGCACTACAGCAACACCCTACTTTGCTGACCCCTGTCTTGTGCCACTCTGAAAAGCCCCTTACTGCTTTTGACCTTGAGATACTCTTCAAACCCGACCTCAGTCCTCCGGGGAGTAATCGAAGACTTAAAGAAAATCAAACCATGGGCTACTGGGCAGACTATCTCCTTGATTGTGAAGAAGGCCAGGCTGCTGTGTCTGTGGAAGGTGTTTTGATGTTTGCTACTGGGCTGTCTTCACTTCCCCCATCTGGCTTGGAACCACCGCCAAAAATACAGTTCCTGGATAACTCTGCATTGCCAATGGCAAATACATGTGCAAACACCTTGAAATTACCACTCCTTGACTCCTACAATTTGTTTAAGTCACAAATGGACTTTGGAATTCAAAATAGTCCAGGATTTGGCTGTTTTTAA
>TCONS_00002016
GTACAACATATTCTGAAACCTGTGACATGCTGGTCAAATTTACGGATGATACTGGTGTTCTGGAGGAGGGACTTGACACTGGAGGTCCAAGACGAGAGTTTTTAACTCTATTAATGAAACACCTTAAAGACCGGCCCATTTTTGATGGACCAGAAGGACATCGATTCTTGGCCTACAATGCAAACGATTGAGAATGCTGCTTCATTGGATTCTCTGCACGAATGTATGATGAGACACAGCACAATGTTACAGACAGCAGGTTGTCTGAGACAAGTGGCTACTGTGGAGGAAAAGAGAGAAATAGTTTCAGACTACCTCAAATGGTATGTTATTGACCGCAACGCATCTGTAATTGACAGATTCCGGGAGGGTCTTTCAACTCTGGAGTTTTTGACTGCACTACAGCAACACCCTACTTTGCTGACCCCTGTCTTGTGCCACTCTGAAAAGCCCCTTACTGCTTTTGACCTTGAGATACTCTTCAAACCCGACCTCAGTCCTCCGGGGAGTAATCGAAGACTTAAAGAAAATCAAACCATGGGCTACTGGGCAGACTATCTCCTTGATTGTGA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0007369 gastrulation biological_process
GO:0031399 regulation of protein modification process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0032268 regulation of cellular protein metabolic process biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000070039

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003418 False 1848 lncRNA 0.43 12 25709312 25714494
TCONS_00002016 True 572 processed_transcript 0.45 3 25709813 25711803

Neighbor

gene id symbol gene type direction distance location
XLOC_001244 fgg coding downstream 29929 25669799 ~ 25679383 (-)
XLOC_001243 si:dkey-30k22.7 coding downstream 60744 25624758 ~ 25648568 (-)
XLOC_001242 AL935184.2 coding downstream 151025 25555725 ~ 25558287 (-)
XLOC_001241 sfrp2 coding downstream 213179 25491324 ~ 25496133 (-)
XLOC_001240 arfip1 coding downstream 222741 25442699 ~ 25486571 (-)
XLOC_001246 map9 coding upstream 23273 25737767 ~ 25749888 (-)
XLOC_001247 CU929073.1 coding upstream 148472 25862966 ~ 25863639 (-)
XLOC_001248 usp53b coding upstream 171943 25886437 ~ 25911901 (-)
XLOC_001249 myoz2b coding upstream 203097 25917591 ~ 25936679 (-)
XLOC_001250 synpo2b coding upstream 244590 25959084 ~ 25966411 (-)
XLOC_001235 BX511127.1 non-coding downstream 884049 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1102550 24602332 ~ 24606762 (-)
XLOC_001230 NA non-coding downstream 1798306 23908717 ~ 23911006 (-)
XLOC_001229 NA non-coding downstream 1925543 23751953 ~ 23783769 (-)
XLOC_001256 NA non-coding upstream 468905 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 529011 26243505 ~ 26248287 (-)
XLOC_001259 CU570873.1 non-coding upstream 636032 26350526 ~ 26350641 (-)
XLOC_001263 NA non-coding upstream 840386 26554880 ~ 26595059 (-)

Expression


Co-expression Network