XLOC_001248 (usp53b)


Basic Information

Item Value
gene id XLOC_001248
gene name usp53b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25886437 ~ 25911901 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002020
ATGGCATGGGTCAAACTGTTTAAAAAGCCTGGAGGCAACATGTCTGGCACAGGTGCAAGGAGTGGGACGGGGCTGAGCAAGTCCTATCAGCCGGGCAGCATGATCTCTCTCGCTTTGACCAAAGGACTTCTAAATGAGCCAGGCCAGAACAGCTGCTTTCTCAACAGTGCGGTGCAGGTTCTTTGGCAGCTTGACATCTTCAGGAGGAGCCTACGACAGCTGTCTGGCCATTTCTGCTTGGGTGATGCCTGTATTTTCTGCGCTTTAAAGAGCATCTTCTGTCAGTTCCAGCAGAGTCGAGAGCGGGCTCTGCCGTCAGACACTCTACGTCACGCTCTGGCTGAGACCTTTAAAGATGAGCAGCGCTTCCAGCTGGGTCTCATGGATGATGCAGCGGAGTGTTTTGAGAACATTCTAGAAAGGATACACCTCCACCTTGTTTCTGACTCAGCTACAGAAACATGTACTTCCAAATCATGCATCACCCACCAGAAGTTTGCTATGACTCTCTATGAGCAGTTTGTTTGTCGTAGTTGTGGAGCATCATCAGACCCTCTCCCTTTCACTGAGCTTGTGCACTATGTTTCCTCTACAGCCCTCTGTCAACAAGTGGAGCGAATCTTGGAGAAGACAGACAGACTGCGTTCAGACATGTTTGGTGAACTGTTACAGGCAGCCAACACCATTGGAGATCTCCGCAATTGCCCTAGTAACTGTGGGCAGAGTATCAAAATCCGCCGTGTGCTGATGAACTGCCCCGAGATTGTAACCATTGGCTTTGTGTGGGACGCTGAACAGTCCGACCTCACTGAAGATGTCATCCGCTGTCTGGGCCCAAACCTCAATCTGTCAGGGCTGTTTTATAGAGTCACCGATGAAAATGCCAAGAAAAGAGATCTTCACCTGGTGGGAATGATCTGCTACTCTAGTCGACATTACCTAGCATTCGCTTTTCACAGCAAGTCTTCCAAATGGATCTTTTTTGATGATGCAACAGTGAAAGagATTGGCTCCAAGTGGAAAGATGTGGCATCTAAATGTATTCGGGGTCACTTTCAGCCTCTTCTCTTGTTTTATGCCAACCCTGATGGTACTGCAGTGTCCAATGAGGATGCCCCCCGACAGACCACCATGTGGTCACGTTATAACTCTCCTCTCAATGGAAAAGGGACAG
>TCONS_00002021
AAACAACATTGATTTTCTCCTTTCATTATAACTCACCCTCTGCACCCCCAACCCCTCCCTGTGTGTCTCTCCCTGTCTGTAGGTCGTCCTTTGTTAGCCAGTGTTCTACTTCAGTGCCTGTCCTGAGGAGCCTTTATGAATGACCCTCTTCAGTGACCTCCATTGACTTTGCTGGAAATGCAGAGGAGAGTAATGGATTTGTTCTTCTATCTGCGTCCATCCTCATATTGCCTGTGTGCCTGGATGCAGAGGAATCCACACATGCAGTGGAGACAGAGCCAGATCATTGTTATAGTAACTGCTGGACTGATAAAGCAATGTGCTTCAACTTGTGGCTGAATGCCACATGCTTGCGTTAAATGTAAAGCAACTGAATAATTTCTTATATCCCAATGGTGTGCTGTCAAATTCTGCACATCGAAAAAAAATCTGTTGCAATATATTTTGCTCTTTTGTCGGGGGGCATTATACAGTTGGCTTTCAGCTACAGGGACTGCCAGGACTAATGTTGCCTAAAACAGATCCATCAGCCTCAAGTTGCTCAAGATCCATCAGCCTCAAGAGTAATTGACTGGTTATTTGCTGGAGAGAGGGCCAGGCTCCAACCTCATGGCATGGGTCAAACTGTTTAAAAAGCCTGGAGGCAACATGTCTGGCACAGGTGCAAGGAGTGGGACGGGGCTGAGCAAGTCCTATCAGCCGGGCAGCATGATCTCTCTCGCTTTGACCAAAGGACTTCTAAATGAGCCAGGCCAGAACAGCTGCTTTCTCAACAGTGCGGTGCAGGTTCTTTGGCAGCTTGACATCTTCAGGAGGAGCCTACGACAGCTGTCTGGCCATTTCTGCTTGGGTGATGCCTGTATTTTCTGCGCTTTAAAGAGCATCTTCTGTCAGTTCCAGCAGAGTCGAGAGCGGGCTCTGCCGTCAGACACTCTACGTCACGCTCTGGCTGAGACCTTTAAAGATGAGCAGCGCTTCCAGCTGGGTCTCATGGATGATGCAGCGGAGTGTTTTGAGAACATTCTAGAAAGGATACACCTCCACCTTGTTTCTGACTCAGCTACAGAAACATGTACTTCCAAATCATGCATCACCCACCAGAAGTTTGCTATGACTCTCTATGAGCAGTTTGTTTGTCGTAGTTGTGGAGCATCATCAGACCCTCTCCCTTTCACTGAGCTTGTGCACTATGTTTCCTCTACAGCCCTCTGTCAACAAGTGGAGCGAATCTTGGAGAAGACAGACAGACTGCGTTCAGACATGTTTGGTGAACTGTTACAGGCAGCCAACACCATTGGAGATCTCCGCAATTGCCCTAGTAACTGTGGGCAGAGTATCAAAATCCGCCGTGTGCTGATGAACTGCCCCGAGATTGTAACCATTGGCTTTGTGTGGGACGCTGAACAGTCCGACCTCACTGAAGATGTCATCCGCTGTCTGGGCCCAAACCTCAATCTGTCAGGGGTGAGGGACAAATGTGCCCGACTATTGATGAATTATCTGCTCATCAAAGTCAGATTTTACAATTCTGTGtgttcaatattattatattgaattatacaACTGTattgtcattcattaattttcctttggcttagttcctttattaatcaggggtcaacacagcggaatgaatcggcaacttatcaagcatatattttacatagcggatccatttccagctgcaacccactactgggaaacacccatatactctcacatgcacacacatacacttcggctaatttagtttattcaatttagctttagtgcatgtctttggactgtagggaaaaccggagcacctggaggaaacccacaccaacacagggagaacatgcaaattccacacagaaatgcctaatGGCCCTGCTCGGACtcggaccagtgaccttcttgctgtgaggtgacagtgctacccactgcgccactgtgtacAACTGTATTGTAATGCATGCAGTTTTTAATGCAATATGTAATAAATGCTTGTGAACACAAATGGGATCAACATATAGGCCAGTTCAAAATCCATTTATGCATTTTTACCCAAGGTAAAATCTTCCAAAAATCTTCATAAGAATAAAGGCTATACCAATAATTATCGACTGGTGGCTAGAAACTTCATTTTTACAGATGGTCAAATTGCAAGTTATGTAATGATCTTAAAATTTTAGATATAAATTGAACTAGATATTATTATGTTTGGataatttattaatgattttctTAATTGAGAATGTTTAGAGTACCAAGATCTGCACACAAGCTGTGGTAGACCAAATAGATGTTTTGTGCACTAAATTAAAAATGACTGTTATTCCAATGACTGATACATGGTCATGTTTTATTCAGTAATTCCATTGTTTTAGTTAGATTATGGGCCTGTGTAGAATTACAGCCAAGTTTGTACAACATGGTCATATGTTAACTACAATGAGGGAACAAACTAAAAAGTCATGGGAACTAAActgtcaagcccaaaattatttaTTCGCCTGAACATAATGTGAGCTTATAAAAAAGAGGTTTGATCTTATAGAGCCATTACAAAATTGATTacagtttttgttaaaaaaaaacaacaacccaaaAAAGTGTAACTTCATAGATTTGCAACTGGCTTTGTATTTATACAAAGTTGGGAGTGTAGTACACATCATCAGCAGACTTTTGACATCTCCCAGGCTGCAGCTTTCTGAGCCACCGATAATGCTTGAAGGCTTTCCACTCTCTTGAAGGACAGAAACATTTTAGAAGCACTGCTTTCAAAGTCAGATATTAAAGCTCAGCAGATTAGTCTGGTTCAAAAGAAGGCACAGATAAGCCTTCAGGACACTACCCAAGTCTCAGGTTATGACCTTGAGGTGGCTTGCATGCCAATGGTTTCCTCCTCAAAAACACATAACTCAATGGTACGTGGTAAGCCACTCTATAGCGTGAAGGGGGATAGTCCTGCAGAGAACCAGTTCTGAAGCAACTCCAGCAATAGATCTACTGGGC

Function

symbol description
usp53b Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in response to auditory stimulus and sensory perception of sound. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cell-cell junction. Orthologous to human USP53 (ubiquitin specific peptidase 53).

GO:

id name namespace
GO:0010996 response to auditory stimulus biological_process
GO:0007605 sensory perception of sound biological_process
GO:0016579 protein deubiquitination biological_process
GO:0005911 cell-cell junction cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-168 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in response to auditory stimulus and sensory perception of sound. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cell-cell junction. Orthologous to human USP53 (ubiquitin specific peptidase 53).

Ensembl:

ensembl_id ENSDARG00000076499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002020 False 1174 mRNA 0.49 9 25886437 25911292
TCONS_00002021 True 3000 mRNA 0.43 7 25897231 25911901

Neighbor

gene id symbol gene type direction distance location
XLOC_001247 CU929073.1 coding downstream 22798 25862966 ~ 25863639 (-)
XLOC_001246 map9 coding downstream 136549 25737767 ~ 25749888 (-)
XLOC_001245 NA coding downstream 171943 25709312 ~ 25714494 (-)
XLOC_001244 fgg coding downstream 207054 25669799 ~ 25679383 (-)
XLOC_001243 si:dkey-30k22.7 coding downstream 237869 25624758 ~ 25648568 (-)
XLOC_001249 myoz2b coding upstream 5690 25917591 ~ 25936679 (-)
XLOC_001250 synpo2b coding upstream 47183 25959084 ~ 25966411 (-)
XLOC_001251 si:ch211-145b13.5 coding upstream 99578 26011479 ~ 26023678 (-)
XLOC_001252 si:ch211-145b13.6 coding upstream 113391 26025292 ~ 26027337 (-)
XLOC_001253 gpank1 coding upstream 124222 26036123 ~ 26045584 (-)
XLOC_001242 AL935184.2 non-coding downstream 328150 25555725 ~ 25558287 (-)
XLOC_001235 BX511127.1 non-coding downstream 1061174 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1279675 24602332 ~ 24606762 (-)
XLOC_001256 NA non-coding upstream 271498 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 331604 26243505 ~ 26248287 (-)
XLOC_001259 CU570873.1 non-coding upstream 438625 26350526 ~ 26350641 (-)
XLOC_001263 NA non-coding upstream 642979 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 661528 26573429 ~ 26575260 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10501568_10527998 USP53B coding CI01000300 null 10501038 ~ 10529291 (-)
eurasian perch (Perca fluviatilis) G30759 NA non-coding NC_053114.1 CM020911.1 29140354 ~ 29140638 (-)