XLOC_001247 (CU929073.1)


Basic Information

Item Value
gene id XLOC_001247
gene name CU929073.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25862966 ~ 25863639 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002019
GTTCATCCTCGTGTATCACCCCAGGAGTCTCGCTCAAACCAGGGGATGGCATCTGGAGTCAGTCGTCACGCTGATTCATCATCGCTTTCCCATCGTGGCTCCACAAATCCCACTGAGCGTGGCAAGTCCAAGCCCTCATGGAGACCAGTACGGGAGGTCCTCAATGTAGACAGTGTGCTGAGCGAACTAGAGCGACgacagcagcagcaacagcagcaacAGCGTGGAAGCCCTCGATGTGTGCGTCGATTCGCCCATGAGAGGGGGCTGATGAAGGACAAGCAGAAGGGTCTGATGACTATTTATGAAGATGACTCACGGCTGGAGACTGAAAGTCAAAGCTCCCAGGAGTCTCAACGACAGATGATGGTGACCAGGTCTAAAGGTGGAGCAAATGTAGCACAGCGAAGTGATAACTGGGTAATACAGAGGACAGAGTCAGGATATGAGAGCAGTGATAGGCTGAGCAGCGGCTCTACCAATCCTGACTCACCTGGAGTTGAGAACTTTACCGGCAAAGAGCTGAGACTCAGTCAAGATGCACAGCACCTCAGGGATCAAGGCCATAATAATCAAGATGACTCAAAAATGGAG

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0048666 neuron development biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0034706 sodium channel complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002019 True 594 lncRNA 0.52 2 25862966 25863639

Neighbor

gene id symbol gene type direction distance location
XLOC_001246 map9 coding downstream 113078 25737767 ~ 25749888 (-)
XLOC_001245 NA coding downstream 148472 25709312 ~ 25714494 (-)
XLOC_001244 fgg coding downstream 183583 25669799 ~ 25679383 (-)
XLOC_001243 si:dkey-30k22.7 coding downstream 214398 25624758 ~ 25648568 (-)
XLOC_001242 AL935184.2 coding downstream 304679 25555725 ~ 25558287 (-)
XLOC_001248 usp53b coding upstream 22798 25886437 ~ 25911901 (-)
XLOC_001249 myoz2b coding upstream 53952 25917591 ~ 25936679 (-)
XLOC_001250 synpo2b coding upstream 95445 25959084 ~ 25966411 (-)
XLOC_001251 si:ch211-145b13.5 coding upstream 147840 26011479 ~ 26023678 (-)
XLOC_001252 si:ch211-145b13.6 coding upstream 161653 26025292 ~ 26027337 (-)
XLOC_001235 BX511127.1 non-coding downstream 1037703 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1256204 24602332 ~ 24606762 (-)
XLOC_001230 NA non-coding downstream 1951960 23908717 ~ 23911006 (-)
XLOC_001256 NA non-coding upstream 319760 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 379866 26243505 ~ 26248287 (-)
XLOC_001259 CU570873.1 non-coding upstream 486887 26350526 ~ 26350641 (-)
XLOC_001263 NA non-coding upstream 691241 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 709790 26573429 ~ 26575260 (-)

Expression


Co-expression Network