RNA id: TCONS_00002019


Basic Information

Item Value
RNA id TCONS_00002019
length 594
lncRNA type lincRNA
GC content 0.52
exon number 2
gene id XLOC_001247
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25862966 ~ 25863639 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATCCTCGTGTATCACCCCAGGAGTCTCGCTCAAACCAGGGGATGGCATCTGGAGTCAGTCGTCACGCTGATTCATCATCGCTTTCCCATCGTGGCTCCACAAATCCCACTGAGCGTGGCAAGTCCAAGCCCTCATGGAGACCAGTACGGGAGGTCCTCAATGTAGACAGTGTGCTGAGCGAACTAGAGCGACgacagcagcagcaacagcagcaacAGCGTGGAAGCCCTCGATGTGTGCGTCGATTCGCCCATGAGAGGGGGCTGATGAAGGACAAGCAGAAGGGTCTGATGACTATTTATGAAGATGACTCACGGCTGGAGACTGAAAGTCAAAGCTCCCAGGAGTCTCAACGACAGATGATGGTGACCAGGTCTAAAGGTGGAGCAAATGTAGCACAGCGAAGTGATAACTGGGTAATACAGAGGACAGAGTCAGGATATGAGAGCAGTGATAGGCTGAGCAGCGGCTCTACCAATCCTGACTCACCTGGAGTTGAGAACTTTACCGGCAAAGAGCTGAGACTCAGTCAAGATGCACAGCACCTCAGGGATCAAGGCCATAATAATCAAGATGACTCAAAAATGGAG

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0048666 neuron development biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0034706 sodium channel complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003418 lncRNA downstream 148472 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 186867 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 304679 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 376547 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00002952 lncRNA downstream 718584 25143964 ~ 25144382 (-) True XLOC_001236
TCONS_00003420 lncRNA upstream 319760 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 319760 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 379866 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 531477 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 691241 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002017 mRNA downstream 113078 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00002018 mRNA downstream 113309 25737780 ~ 25749657 (-) True XLOC_001246
TCONS_00002012 mRNA downstream 183583 25669799 ~ 25679383 (-) False XLOC_001244
TCONS_00002013 mRNA downstream 183627 25669808 ~ 25679339 (-) False XLOC_001244
TCONS_00002011 mRNA downstream 214398 25624758 ~ 25648568 (-) True XLOC_001243
TCONS_00002020 mRNA upstream 22798 25886437 ~ 25911292 (-) False XLOC_001248
TCONS_00002021 mRNA upstream 33592 25897231 ~ 25911901 (-) True XLOC_001248
TCONS_00002022 mRNA upstream 53952 25917591 ~ 25936679 (-) False XLOC_001249
TCONS_00002023 mRNA upstream 54580 25918219 ~ 25936677 (-) False XLOC_001249
TCONS_00002025 mRNA upstream 95445 25959084 ~ 25966411 (-) False XLOC_001250
TCONS_00002016 other downstream 151163 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 186626 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 305036 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 1037703 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2521276 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00002024 other upstream 54635 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002039 other upstream 187842 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 320100 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 389269 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 486887 26350526 ~ 26350641 (-) True XLOC_001259

Expression Profile

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