XLOC_001240 (arfip1)


Basic Information

Item Value
gene id XLOC_001240
gene name arfip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25442699 ~ 25486571 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002005
ATCGATGTTGGCATTGTTGTTTTGACCACTAGGAGACAGACATGCTGTGGCTCAAGTACATGTAGCTACTGACACTCACGTCCTCTTCCGGGTGTGTTTGAAAAGACTTTCACTGAGCTGTGGAGGGACTCGCAGCGTATCGAATGATACACAAAGCAGCTCAAACTCAAGCCGGGATTGTTTTTATGAGCAGAGTCGTGCAACAGCGAAGAGAACAGCGGTAATCGGTGTGCAGGTGGCTATGGCAGAGGATGCCCGCAGAAGCCCGGCTGCTCAAATCTCAGTCACCAGAAACGGAGAAGCAGACAAGAGTCACGAGGACGTGTTTCAGAGGGATATGTCACATGTCTCCTCTGGACCAGTCACATCGCACTTCCACAATTCACCTGAAAACTATGCAATGACTGAAGGAGTGGTACAAGTTGGGCCTGATGCAGGTGCTTTGAGAGAGCAGCAGATGGGAGGTGCAGTGGTTCTTGCTGATGATATAAAGAGTCCTGCTATAGAGAAACTGGAGCTGGTGAGGAAGTGGAGCATCAACACTTACAAATGCACAAAGCAGATTTTGTCAGAAAAGTTAGGCCGTGGCTCCCGTACAGTTGATCTGGAGCTGGAGGCTCAGATCGATGTTCTTCGGGACAACAAGCGCAAATATGAGCATGTGATCAAACTGGCGCAGACTCTCTGCACTCAGCTGGAGCAGATGCTGATGACGCAGAGGCAGCTCGGGGATGCGTTTGCTGACCTTAGTCTCAAGACGCCCGCGCTACATgaggaatTTGGCTACAATGCAGAAACCCAAAAACTCCTGGCAAAGAATGGAGAAACTCTGTTAGGAGCGATCAGCTTCTTTATTGCCAATGTTAAAACTCTAGTGGATAAAACTATTGAGGACACCTTGATCAACATTAAGCAATATGAAGCCGCAAGGATTGAGTATGATGCGTATCGCACAGATTTAGAGGAGCTCAATCTGGGTCCACGGGACGCAAACACACTCCCCAAGATCGAACTCTCCCAGCAACAGTTCCAGATCCACCGTGAAAAATATGAGAAAATGCGCAATGACGTCTCGGTCAAACTCAAGTTTCTAGAGGAAAACAAGGTGAAGGTTTTACACAACCAGCTGATTCTCTTCCATAACGCCATCGCAGCATACTTCGCAGGCAACCAACAGCAGCTGGAACAGACCCTTAAACAGTTCCACATCAAGCTAAAGTTACCAGGGGGAGAAACCCCGTCCTGGCTCGAGGAGCACTGATTGAGTCAGACGGTTTGATCCACAGcacacatttaaagggatagctcacccctaaaaaaaaaaaaacacacattctctcatgtactcatcctccacttgattcaaacatgtttgactttctgtcttctgttgaaaatAAAAGTAAGACATATTTAGGgatgttggaaaaaaacagccattctCTTCCAGGGTATATTTTTGATTCCTACCAATATTCTTCTGAATAACTGAACTTTTTGTGTTCGGcagaagaaataaattcataaagtTTTAAAACCACTTTAGTATGAGGAAGTAAACATTTgtcggtgaactatccctttaaaaaatgcACTCCATGAGGAAaccaaatccaaaaaaaaaaaaaa
>TCONS_00002006
CTGTGGCTCAAGTACATGTAGCTACTGACACTCACGTCCTCTTCCGGGTGTGTTTGAAAAGACTTTCACTGAGCTGTGGAGGGACTCGCAGCGTATCGAATGATACACAAAGCAGCTCAAACTCAAGCCGGGATTGTTTTTATGAGCAGAGTCGTGCAACAGCGAAGAGAACAGCGGTAATCGGTGTGCAGGAATGTCAGAAGCTAGTTTTGACTTGGAGAAGAATGCCTCACGGGAAAAACAGTCGAATCCTAATGAACAGGCCTGCCAAAACACTGCTGACTCTCTGAGCCAATCAAAGGCCAGAAAAAACAGCCTGGATGAAACGCAGATGACTGAAATTGACATCAATGAGAACAAGGAGGTTGAAAACCACAGTAATACTGTAAGTGAGGATGATGGTCATGAAGATGGGGATTCTGAGGCCCAGAGTAAAACTAGTGGAGTCATTCAAGATAATGCTGATTTTCAAAGAACGAGCAGAGTGGCAACAGAAGCTGATGTGAAGGTGGCTATGGCAGAGGATGCCCGCAGAAGCCCGGCTGCTCAAATCTCAGTCACCAGAAACGGAGAAGCAGACAAGAGTCACGAGGACGTGTTTCAGAGGGATATGTCACATGTCTCCTCTGGACCAGTCACATCGCACTTCCACAATTCACCTGAAAACTATGCAATGACTGAAGGAGTGGTACAAGTTGGGCCTGATGCAGGTGCTTTGAGAGAGCAGCAGATGGGAGGTGCAGTGGTTCTTGCTGATGATATAAAGAGTCCTGCTATAGAGAAACTGGAGCTGGTGAGGAAGTGGAGCATCAACACTTACAAATGCACAAAGCAGATTTTGTCAGAAAAGTTAGGCCGTGGCTCCCGTACAGTTGATCTGGAGCTGGAGGCTCAGATCGATGTTCTTCGGGACAACAAGCGCAAATATGAGCATGTGATCAAACTGGCGCAGACTCTCTGCACTCAGCTGGAGCAGATGCTGATGACGCAGAGGCAGCTCGGGGATGCGTTTGCTGACCTTAGTCTCAAGACGCCCGCGCTACATgaggaatTTGGCTACAATGCAGAAACCCAAAAACTCCTGGCAAAGAATGGAGAAACTCTGTTAGGAGCGATCAGCTTCTTTATTGCCAATGTTAAAACTCTAGTGGATAAAACTATTGAGGACACCTTGATCAACATTAAGCAATATGAAGCCGCAAGGATTGAGTATGATGCGTATCGCACAGATTTAGAGGAGCTCAATCTGGGTCCACGGGACGCAAACACACTCCCCAAGATCGAACTCTCCCAGCAACAGTTCCAGATCCACCGTGAAAAATATGAGAAAATGCGCAATGACGTCTCGGTCAAACTCAAGTTTCTAGAGGAAAACAAGGTGAAGGTTTTACACAACCAGCTGATTCTCTTCCATAACGCCATCGCAGCATACTTCGCAGGCAACCAACAGCAGCTGGAACAGACCCTTAAACAGTTCCACATCAAGCTAAAGTTACCAGGGGGAGAAACCCCGTCCTGGCTCGAGGAGCACTGATTGAGTCAGACGGTTTGATCCACAGcacacatttaaagggatagctcacccctaaaaaaaaaaaaacacacattctctcatgtactcatcctccacttgattcaaacatgtttgactttctgtcttctgttgaaaatAAAAGTAAGACATATTTAGGgatgttggaaaaaaacagccattctCTTCCAGGGTATATTTTTGATTCCTACCAATATTCTTCTGAATAACTGAACTTTTTGTGTTCGGcagaagaaataaattcataaagtTTTAAAACCACTTTAGTATGAGGAAGTAAACATTTgtcggtgaactatccctttaaaaaatgcACTCCATGAGGAAaccaaa
>TCONS_00002007
AAAAGACTTTCACTGAGCTGTGGAGGGACTCGCAGCGTATCGAATGATACACAAAGCAGCTCAAACTCAAGCCGGGATTGTTTTTATGAGCAGAGTCGTGCAACAGCGAAGAGAACAGCGGTAATCGGTGTGCAGGTGGCTATGGCAGAGGATGCCCGCAGAAGCCCGGCTGCTCAAATCTCAGTCACCAGAAACGGAGAAGCAGACAAGAGTCACGAGGACGTGTTTCAGAGGGATATGTCACATGTCTCCTCTGGACCAGTCACATCGCACTTCCACAATTCACCTGAAAACTATGCAATGACTGAAGGAGTGGTACAAGTTGGGCCTGATGCAGGGTCGCCACCACAGACCAACACACCTCGAGTTGTGGCAAGTCCTGCAGCAGCCAGTCGGCTCGCTCGCAGCATCAGCGATAGTCAGGTGGAGATACAGAAAGGTGCTTTGAGAGAGCAGCAGATGGGAGGTGCAGTGGTTCTTGCTGATGATATAAAGAGTCCTGCTATAGAGAAACTGGAGCTGGTGAGGAAGTGGAGCATCAACACTTACAAATGCACAAAGCAGATTTTGTCAGAAAAGTTAGGCCGTGGCTCCCGTACAGTTGATCTGGAGCTGGAGGCTCAGATCGATGTTCTTCGGGACAACAAGCGCAAATATGAGCATGTGATCAAACTGGCGCAGACTCTCTGCACTCAGCTGGAGCAGATGCTGATGACGCAGAGGCAGCTCGGGGATGCGTTTGCTGACCTTAGTCTCAAGACGCCCGCGCTACATgaggaatTTGGCTACAATGCAGAAACCCAAAAACTCCTGGCAAAGAATGGAGAAACTCTGTTAGGAGCGATCAGCTTCTTTATTGCCAATGTTAAAACTCTAGTGGATAAAACTATTGAGGACACCTTGATCAACATTAAGCAATATGAAGCCGCAAGGATTGAGTATGATGCGT
>TCONS_00002008
AAAGCAGCTCAAACTCAAGCCGGGATTGTTTTTATGAGCAGAGTCGTGCAACAGCGAAGAGAACAGCGGTAATCGGTGTGCAGGAATGTCAGAAGCTAGTTTTGACTTGGAGAAGAATGCCTCACGGGAAAAACAGTCGAATCCTAATGAACAGGCCTGCCAAAACACTGCTGACTCTCTGAGCCAATCAAAGGCCAGAAAAAACAGCCTGGATGAAACGCAGATGACTGAAATTGACATCAATGAGAACAAGGAGGTTGAAAACCACAGTAATACTGTAAGTGAGGATGATGGTCATGAAGATGGGGATTCTGAGGCCCAGAGTAAAACTAGTGGAGTCATTCAAGATAATGCTGATTTTCAAAGAACGAGCAGAGTGGCAACAGAAGCTGATGTGAAGGTGACCGTAATCATGTAGTAAAACCTGTAGCTTGGCTTATGCTTGATCTCGCTGTTATCTGTTGCTGTCATTTCAGACattttgatttttgaaaatcaataATGATAATCAACCAAATTGTGCCTGATTTTACAACTGCCTGAATACGACAGTGCTGGGTTTCTCTCTGTGTTTTCATGTCTTTGTGAGGTGTATTCTGTCCTTTTAATTGGGCGATGGTggattttttttaggtttttgtaAAAATTTGCTTGGTGGTGGTTTTGTTGCATCTAAATCTTTTACGTTTTTGTGCTCTGAAGTTCGCAGTCTTGTCCTTGCTGTTGTTGgtggtgattttatttatttgatttatttgttttatttttattttttttagagaaaATCTGATTCACAGATTCCCTGTGTAGTGTATACAAGGCTGAAAATAACAGGCTTGTGGCAAAAATGCCACCAAAACAATACCAAAATGCTTcacaatcaaaacaaacaattacacAATTAAAGTGAAATGTAAAAGAATGGAAGGTGCCAGTTCACAGCTTTACATTTAAAGG

Function

symbol description
arfip1 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0050708 regulation of protein secretion biological_process
GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070273 phosphatidylinositol-4-phosphate binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2690 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000070055

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002005 False 1629 mRNA 0.45 8 25442699 25486571
TCONS_00002006 False 1885 mRNA 0.45 9 25442716 25486527
TCONS_00002007 False 949 mRNA 0.50 8 25446510 25486471
TCONS_00002008 True 957 lncRNA 0.39 2 25478767 25486419

Neighbor

gene id symbol gene type direction distance location
XLOC_001239 fhdc1 coding downstream 3765 25399514 ~ 25438934 (-)
XLOC_001238 trim2a coding downstream 72418 25322445 ~ 25370281 (-)
XLOC_001237 tmem154 coding downstream 265474 25154076 ~ 25177225 (-)
XLOC_001236 fbxw7 coding downstream 298260 24870661 ~ 25144439 (-)
XLOC_001235 BX511127.1 coding downstream 617436 24825147 ~ 24825263 (-)
XLOC_001241 sfrp2 coding upstream 4753 25491324 ~ 25496133 (-)
XLOC_001242 AL935184.2 coding upstream 69154 25555725 ~ 25558287 (-)
XLOC_001243 si:dkey-30k22.7 coding upstream 138187 25624758 ~ 25648568 (-)
XLOC_001244 fgg coding upstream 183228 25669799 ~ 25679383 (-)
XLOC_001245 NA coding upstream 222741 25709312 ~ 25714494 (-)
XLOC_001234 NA non-coding downstream 835937 24602332 ~ 24606762 (-)
XLOC_001230 NA non-coding downstream 1531693 23908717 ~ 23911006 (-)
XLOC_001229 NA non-coding downstream 1658930 23751953 ~ 23783769 (-)
XLOC_001225 NA non-coding downstream 1995399 23445485 ~ 23447300 (-)
XLOC_001247 CU929073.1 non-coding upstream 376395 25862966 ~ 25863639 (-)
XLOC_001256 NA non-coding upstream 696828 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 756934 26243505 ~ 26248287 (-)

Expression


Co-expression Network