RNA id: TCONS_00002007


Basic Information

Item Value
RNA id TCONS_00002007
length 949
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_001240
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25442699 ~ 25486571 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGACTTTCACTGAGCTGTGGAGGGACTCGCAGCGTATCGAATGATACACAAAGCAGCTCAAACTCAAGCCGGGATTGTTTTTATGAGCAGAGTCGTGCAACAGCGAAGAGAACAGCGGTAATCGGTGTGCAGGTGGCTATGGCAGAGGATGCCCGCAGAAGCCCGGCTGCTCAAATCTCAGTCACCAGAAACGGAGAAGCAGACAAGAGTCACGAGGACGTGTTTCAGAGGGATATGTCACATGTCTCCTCTGGACCAGTCACATCGCACTTCCACAATTCACCTGAAAACTATGCAATGACTGAAGGAGTGGTACAAGTTGGGCCTGATGCAGGGTCGCCACCACAGACCAACACACCTCGAGTTGTGGCAAGTCCTGCAGCAGCCAGTCGGCTCGCTCGCAGCATCAGCGATAGTCAGGTGGAGATACAGAAAGGTGCTTTGAGAGAGCAGCAGATGGGAGGTGCAGTGGTTCTTGCTGATGATATAAAGAGTCCTGCTATAGAGAAACTGGAGCTGGTGAGGAAGTGGAGCATCAACACTTACAAATGCACAAAGCAGATTTTGTCAGAAAAGTTAGGCCGTGGCTCCCGTACAGTTGATCTGGAGCTGGAGGCTCAGATCGATGTTCTTCGGGACAACAAGCGCAAATATGAGCATGTGATCAAACTGGCGCAGACTCTCTGCACTCAGCTGGAGCAGATGCTGATGACGCAGAGGCAGCTCGGGGATGCGTTTGCTGACCTTAGTCTCAAGACGCCCGCGCTACATgaggaatTTGGCTACAATGCAGAAACCCAAAAACTCCTGGCAAAGAATGGAGAAACTCTGTTAGGAGCGATCAGCTTCTTTATTGCCAATGTTAAAACTCTAGTGGATAAAACTATTGAGGACACCTTGATCAACATTAAGCAATATGAAGCCGCAAGGATTGAGTATGATGCGT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0050708 regulation of protein secretion biological_process
GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070273 phosphatidylinositol-4-phosphate binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2690 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

Ensembl:

ensembl_id ENSDART00000134200

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002952 lncRNA downstream 302128 25143964 ~ 25144382 (-) True XLOC_001236
TCONS_00002951 lncRNA downstream 422007 24967346 ~ 25024503 (-) False XLOC_001236
TCONS_00002950 lncRNA downstream 839748 24604431 ~ 24606762 (-) True XLOC_001234
TCONS_00003416 lncRNA downstream 840704 24602559 ~ 24605806 (-) False XLOC_001234
TCONS_00002948 lncRNA downstream 843158 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00003417 lncRNA upstream 69254 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002014 lncRNA upstream 185971 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003418 lncRNA upstream 222841 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002019 lncRNA upstream 376495 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003420 lncRNA upstream 696928 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002004 mRNA downstream 7576 25401342 ~ 25438934 (-) True XLOC_001239
TCONS_00002003 mRNA downstream 7773 25399514 ~ 25438737 (-) False XLOC_001239
TCONS_00002002 mRNA downstream 76229 25322445 ~ 25370281 (-) True XLOC_001238
TCONS_00002001 mRNA downstream 269285 25165263 ~ 25177225 (-) True XLOC_001237
TCONS_00002000 mRNA downstream 269424 25154076 ~ 25177086 (-) False XLOC_001237
TCONS_00002009 mRNA upstream 4853 25491324 ~ 25496133 (-) True XLOC_001241
TCONS_00002011 mRNA upstream 138287 25624758 ~ 25648568 (-) True XLOC_001243
TCONS_00002012 mRNA upstream 183328 25669799 ~ 25679383 (-) False XLOC_001244
TCONS_00002013 mRNA upstream 183337 25669808 ~ 25679339 (-) False XLOC_001244
TCONS_00002017 mRNA upstream 251296 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00001997 other downstream 621247 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2104820 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 2106007 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 2116444 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001939 other downstream 2771897 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00002010 other upstream 69254 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002015 other upstream 189226 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002016 other upstream 223342 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 431803 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002039 other upstream 565010 26051481 ~ 26063159 (-) True XLOC_001254

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10252331_10267292.mRNA True 1691 mRNA 0.44 8 CI01000300 10252331 ~ 10267699 (-)