RNA id: TCONS_00002014


Basic Information

Item Value
RNA id TCONS_00002014
length 812
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_001244
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25669799 ~ 25679383 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGATTTAAAGCAGATGTCTATGCAGCTGGACCAAATGTGCAAAGAGCCCTGCAAAGACACTGTGGAGATTCAGACAGTCACTGGCAAAGATTGTCAGGACATTGCAAACAAAGGTGGTAAGGTCAGCGGGCTGTATTATGTGAAACCAGCCAGAGCCCCTGAAGCGTTCCTGGTCTACTGTGAAATCGACAGCTTTGGACGTGGATGGACTGTACTTCAGAGGGTATAAGACACAACAGAAAATGCACAGTGACACAAACTCCTTTCGAAAAATGACCTgcacaaaacaaacttttaacaTACAACTTTATTGATTCTTTATTGATGTATGTTTTTCTCAGAGGCGGGATGGCAGCGTTGACTTCAGCAAAAACTGGATCCAGTATAAGGAAGGCTTTGGTTACCTCTCACCCGATGACAGGACTGAGTTCTGGTTGGGAAATGAGAAGATACATCTGCTGTCAGTTCAGTCCAGCGTGCCTTATGTGCTGAGGATAGAGATGGTCGATTGGGAAGGCAACAAAAAATATGCAGACTATGCCACTTTCAAACTTGGACCAGAAGTTGATGCTTACCGCTTGACATACGCTTATTACTTTGGCGGAGATGCTGGCGATGCCTTTGATGGTTACGACTTTGGTGACGATCCCAGTGATAAATTCTACACGTCTCACAATGGCATGCAGTTCAGTACAGTTGACAGAGACAACGACAAGTTCCAGGGACACTGTGCTCAGCAGGATGGGTCTGGTTGGTGGATGAACCGCTGCCATGCTGCTCACCTCAATGGAAAATACTATCAGGGTAAATC

Function

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0051258 protein polymerization biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04611 Platelet activation
ko04613 Neutrophil extracellular trap formation
ko05171 Coronavirus disease - COVID-19
ko05150 Staphylococcus aureus infection
ko04147 Exosome
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-040426-1998 Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital afibrinogenemia and multiple myeloma. Orthologous to human FGG (fibrinogen gamma chain).

Ensembl:

ensembl_id ENSDART00000109646

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003417 lncRNA downstream 114155 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 186023 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00002952 lncRNA downstream 528060 25143964 ~ 25144382 (-) True XLOC_001236
TCONS_00002951 lncRNA downstream 647939 24967346 ~ 25024503 (-) False XLOC_001236
TCONS_00002950 lncRNA downstream 1065680 24604431 ~ 24606762 (-) True XLOC_001234
TCONS_00003418 lncRNA upstream 33213 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002019 lncRNA upstream 186867 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003420 lncRNA upstream 507300 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 507300 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 567406 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002011 mRNA downstream 23874 25624758 ~ 25648568 (-) True XLOC_001243
TCONS_00002009 mRNA downstream 176309 25491324 ~ 25496133 (-) True XLOC_001241
TCONS_00002005 mRNA downstream 185871 25442699 ~ 25486571 (-) False XLOC_001240
TCONS_00002006 mRNA downstream 185915 25442716 ~ 25486527 (-) False XLOC_001240
TCONS_00002007 mRNA downstream 185971 25446510 ~ 25486471 (-) False XLOC_001240
TCONS_00002017 mRNA upstream 61668 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00002018 mRNA upstream 61681 25737780 ~ 25749657 (-) True XLOC_001246
TCONS_00002020 mRNA upstream 210338 25886437 ~ 25911292 (-) False XLOC_001248
TCONS_00002021 mRNA upstream 221132 25897231 ~ 25911901 (-) True XLOC_001248
TCONS_00002022 mRNA upstream 241492 25917591 ~ 25936679 (-) False XLOC_001249
TCONS_00002010 other downstream 114512 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 847179 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2330752 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 2331939 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 2342376 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00002016 other upstream 33714 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 242175 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002039 other upstream 375382 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 507640 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 576809 26252908 ~ 26294703 (-) False XLOC_001258

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU475773 False 3425 lncRNA 0.38 2 CI01000300 10369911 ~ 10373793 (+)
eurasian perch (Perca fluviatilis) TU4761 False 180 lncRNA 0.49 2 NC_053112.1 10021625 ~ 10041435 (-)
tiger barb (Puntius tetrazona) TU4761 False 6237 lncRNA 0.53 5 NC_056699.1 14533015 ~ 14596547 (+)