RNA id: TCONS_00002022


Basic Information

Item Value
RNA id TCONS_00002022
length 1493
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_001249
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25917591 ~ 25936679 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTAAGTCAAGAACAGAGTGTGAGACAAAGACAAATCTGGCCGGATCGATCTACCTAAAGTAACCTCTTGCTTTGTACAGGTACTGAACTGAAGAAAACACGCAGCTCTAACAGGTGTTACTATGGACCTGGGAAAGAAACTTTCCACCCCAAAAGACATCATGCTGGAGGAACTTTCCCTCTTGTCAAACCGTGGATCACGTCTTTTTAAAATGCGACAACGGAGGTCAGACAAATACACCTTTGAAAGCATTCAGAATGAAGCCAATGCGCTTTTTAATaatgaaaatcaAGCTAATGCTGAAAACTCAGAAAACAAAGGAGTTGCATCAAAAACTCCACCAAATACACCAGATCCCAGAAACCCAGCGAACCCTGAGGACATTGCACCAGGATATGGAGGTCCTTTGACAAACATTCCTCCAGAGAGGTTTAATGCCACAGCTATGCCCAAATCCTACCACTCCCCCTGGGAAGAGGCCATCATCAATGACCCCACACTGGCTGACACACTTAAAGTTCACATGCCAGTGCCTGAACCGAAAGTAGAGCTGCCTGACTACAAAAGCTTTAATAGGGTTGCTACACCATTTGGCGGTTTCGAAAAAGCTCCACGAGGAATCACCTTTAAGCTTCCAGAGATGGACTTGAATACTCCTCAATACCCTGAGCTTCAGGATCATTCAGCCAAGCGGCCCACTTTCAACAGGACAGCCCAGGGGTGGATCTCTGAAGGCACACCTTTAATTTTACCCACCGTCTCTCTGGAGCCTTTTGAGATCCCTGAGTCTGATGATCTGTAACACCAGTCCAACCCCAAACCCACTGAGCCTGATGGAAGTTTAAGGCTTTTGTAGATGTCCCCCATGTTAGCGTCTGATAACAGCCCAGTGTCATGTTTTATCAGTAAATATTGAACTTCTGTTCTTGGGACTAGTATTTTCACATATCATTTTTTAATGGatgccaaatcaaagaaaaaatGGATATCTAACAAGACAGTATCAAATGAGCAGCAGGAAATGAATCATTTTTAGTATCCATCACAGCATtacaagtattatttactgtaatttattgatATATCCAAGGTGTTGATTTTAATGCTGTGCATGGTTATACTGTGAAACAGTTTTCTAAGGTTGCATTCATCTTTATTAGTAAGTTTCATTTAGTACAGCATAAGATAATAGCTTGTTTTGCTCACATAAACAATCTTTGTAGTGTAAACAGCAACTCTTTGTCTAAAagtaaaattattcattttaatcctgtaattaaatctaatctaatttaatcAGGGATGAATCAATGGAGGAAACAGCCATGTAAATATAATTTGTTGAGTGCCTGAAATAttgtttttactgttaaaaaaatactaCTATAGATTTCTGTCTGAAACATTACATTCACTGTGTTAGAACTTGTACTGTAGCTTATAGAAATTAGTGTACCCAAACTGTGCAAATAAAATGATGAATTATTTGA

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function
GO:0031433 telethonin binding molecular_function
GO:0051373 FATZ binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1853 Predicted to enable FATZ binding activity; actin binding activity; and telethonin binding activity. Predicted to be active in Z disc and actin cytoskeleton. Is expressed in myotome and slow muscle cell. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 16. Orthologous to human MYOZ2 (myozenin 2).

Ensembl:

ensembl_id ENSDART00000136321

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002019 lncRNA downstream 53952 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 203097 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 241492 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 359304 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 431172 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00003420 lncRNA upstream 246720 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 246720 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 306826 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 458437 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 618201 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002021 mRNA downstream 5690 25897231 ~ 25911901 (-) True XLOC_001248
TCONS_00002020 mRNA downstream 6299 25886437 ~ 25911292 (-) False XLOC_001248
TCONS_00002017 mRNA downstream 167703 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00002018 mRNA downstream 167934 25737780 ~ 25749657 (-) True XLOC_001246
TCONS_00002012 mRNA downstream 238208 25669799 ~ 25679383 (-) False XLOC_001244
TCONS_00002025 mRNA upstream 22405 25959084 ~ 25966411 (-) False XLOC_001250
TCONS_00002026 mRNA upstream 24697 25961376 ~ 25966068 (-) False XLOC_001250
TCONS_00002027 mRNA upstream 27015 25963694 ~ 25966082 (-) True XLOC_001250
TCONS_00002028 mRNA upstream 74800 26011479 ~ 26023678 (-) True XLOC_001251
TCONS_00002029 mRNA upstream 88613 26025292 ~ 26027337 (-) False XLOC_001252
TCONS_00002016 other downstream 205788 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 241251 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 359661 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 1092328 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2575901 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00002039 other upstream 114802 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 247060 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 316229 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 413847 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 452474 26389153 ~ 26394460 (-) False XLOC_001260

Expression Profile

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