RNA id: TCONS_00002028


Basic Information

Item Value
RNA id TCONS_00002028
length 2714
RNA type mRNA
GC content 0.33
exon number 8
gene id XLOC_001251
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26011479 ~ 26023678 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtattttttattttaataatggaaATATACACAATTTTTAATAcataatacagtaaaaaatgtcaAGGCAAAGAACtgaccagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatggaaacGGATTCGCTCTCAGGTGTTAGTAAAGCCGACACGCATACTCACCTTCCAGCGTCATTCTCCATCCACATAAAAACCAGCGGAATTCAACCTGACACCAGATAAAAAACTTGTTTTTGCTTCCATCCTCTGGAAATGAGCAGCCGACGGCGACGATGCAAGCGTCAGTTGATCAAGTTCACTCAGCATATTGCTCGACTAATCACAGGAACTCTGAATACAGATAATGAGGACGAAGAACAAGAGAGCACAACGGAACGGTATCACCCAGAAAATCTGGAGCAACTGCAATCGCAGACCCATTTCTCCAGACAAGAGCTGCAGTTACTCTATAGAGGATTCAAGAATGATTGTCCAAGTGGAGTTGTGAATGAGGacacttttaaaaacatatatgctCTGTTCTTCCCACTAGGAGATTCATCAAAGTATGCTCAGTTTCTCTTCAATGCATTTGATAAAGATAAGAATGGCTCTCTTAGTTTTGAGGAGTTAGTCTGTGATCTCTCTGTTTTGCTGAGAGGCACTACCGAAGAAAAGTTGAACTGGGCTTTCAATCTATATGATATCAACAAAGATGGGCAGATAACTAAAGAGGAAATGCTGGATATAATGAAGTCTATTTATGATTTGATGGGGAAATCTATACATCCACGGCTTAAGGAGGAGGCAGTGAGGCAACATGTCAGAATGTTCTTCCAAAACATGGACATAAACCAGGATGGTGTAGTAACTATTGATGAATTCATTGACAGCTGTGAAAAGgaTGAACATATCATGCAGTCTCTTAAGATTTTTGACAATGCAGTCTAGATGTTGACCTGGAATTCCACTCTCAAAAGTTAATGATAACAGCTTTTCTGTACTGTTGTCCTGGATTCTTCTAGACAGCTCAGGACTGCTTTGGACTGTTTATGCCAACACACTACTGAATGTATACCTGCATTGGTAAATGTTTGAGACTGTTTTGTGATGCAAATAGAAATGGAATATTAGCGGTAGAGCAGCAactgcttttaaagcaacagtgTTTTTGTATTATAATGTGCTTCTGTTGTTACCAATGTGGTTCAGTTCTGGGTATCTGTTTCATTCTATTGTTTCACACATCTTCTGTTTCACACCTGAACCGTAAGCACTTAATGTATACTTTTGTAGAGATTCAAAGCCTTTTAACCCCAAcctctttaatatttaatacagtAGATGAATAATATATACAAGACTGGGATTACTTGAAAGCTTTCAAGGTCAAACTAAAACCTTCTGAGTGAAGTAAACGCCCCACTGTTCTTGACGTCAAATGTGCACATTGCATTTGAAGTAACACTGTATTTTTTCTGCCAAAAACATGTTCTGAGGTgagatttttttactttttattatttgtactgtatattatgcaAAAGAATgatttgaattaaatttatgaTAAAATTAAGTTTTATGCTAAAAAATGAAGActcatttttgacattttaaaaaacaaatgacagtaaacataaatatttcattaaCATTCCATATACACTTCAATCACCatgttaagttattttgtttgaaaaaaaaaaagtttttctagaAAATATTCACTGAATTTTAGTCAACAGTACAGCCTTTTGTTTTTTCCCCTAATAATGttggaatacaaaaaaaaattaatcattatgAAATGTAACTTCATGTGATCTTTTGTAGAGTACTCTAAATAAAGTTAGGCTTAGTTGCATTAAAGAAACATTGAAACATATAAgaaacaaaaaagtgtaaaacaaaaagaaatttaaaataatttgaaatacATTTAGGAGGGTGAAGATGATCAGATCCTGAAAAACAAGGGTACTCTACAAGGGTATTTTGGTGCTATTCTATGTTCTGTAAATGcagcatttattattaatgtaatttatttagctatatttataaatcataTCCCTTccatataaattaaatttaaccaGCACTACTATTAATAGCTTAGCATACAATAAAAGATCTTATTAACATTAAAACTCGcacataatacaataaataaatgccaaCAAGTAATTATGGCATGcagatatacatttatttaactgAAAGTTTTGATGTATTCtgtagttttatatattttaaatgtcaagaAATAAAGTATAATGAGTTAGGCACTGGTGAAGTTTTAATATTAACTCATGAATGTGTATAACCAAATTAAGATGAGATGCCTCTATGCCAGATTGCCTTCTCTCTTTCTATCTATCAGATGAAGAGTTCTCTAATAATGTCCATGGCTGAGAACATAACAGTTTTATTGTGCATTCTGGAATTGTTATGAATAGAAAAGACAAGAAGATCTGAAATGTAGACATTTATGAATAGATTATTTGCTTTCCAAAATAATTCCTTTCAACTGTATAATAATTATTTGAAAATTGTCAGTGTCTGGTATAAAATCTAACATTTTTGTCTTGTGGTATTAGTTTGTGTGGTCATATATGTATAGTAAATTATAAAGCGTTTATAATTGCTTATTGTAAGTGTTATGTTCTTTAATAAGCTAATAAATGCTAGC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-35 Predicted to enable calcium ion binding activity. Orthologous to human KCNIP4 (potassium voltage-gated channel interacting protein 4).

Ensembl:

ensembl_id ENSDART00000054202

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002019 lncRNA downstream 147840 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 296985 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 335380 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 453192 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 525060 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00003420 lncRNA upstream 159721 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 159721 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 219827 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 371438 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 531202 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002025 mRNA downstream 45068 25959084 ~ 25966411 (-) False XLOC_001250
TCONS_00002027 mRNA downstream 45397 25963694 ~ 25966082 (-) True XLOC_001250
TCONS_00002026 mRNA downstream 45411 25961376 ~ 25966068 (-) False XLOC_001250
TCONS_00002022 mRNA downstream 74800 25917591 ~ 25936679 (-) False XLOC_001249
TCONS_00002023 mRNA downstream 74802 25918219 ~ 25936677 (-) False XLOC_001249
TCONS_00002029 mRNA upstream 1614 26025292 ~ 26027337 (-) False XLOC_001252
TCONS_00002030 mRNA upstream 1657 26025335 ~ 26027327 (-) False XLOC_001252
TCONS_00002031 mRNA upstream 1742 26025420 ~ 26026956 (-) True XLOC_001252
TCONS_00002032 mRNA upstream 12445 26036123 ~ 26045560 (-) False XLOC_001253
TCONS_00002033 mRNA upstream 12445 26036123 ~ 26045584 (-) False XLOC_001253
TCONS_00002024 other downstream 74838 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002016 other downstream 299676 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 335139 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 453549 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 1186216 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002039 other upstream 27803 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 160061 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 229230 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 326848 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 365475 26389153 ~ 26394460 (-) False XLOC_001260

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10591932_10594068.mRNA True 2023 mRNA 0.40 4 CI01000300 10590384 ~ 10594068 (-)