XLOC_001254 (pdcd4a)


Basic Information

Item Value
gene id XLOC_001254
gene name pdcd4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26046148 ~ 26071535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002036
AAGCGTACAATGGCGACTGAGATTGAAGCATGGACCACTGCCCCCCAAAACGATGGTGTATTCTCAGTTGAGCAACCGCGTGATGATGAGGATGGATCTTTTGGCAGTGAGGATCTAAATGAATTGGAGGTGAATGGGAACTGGACTCCTCAGGAAAAGGCCCTCCATGAGGCCAAACTTAAAGCTAAAGCAAAGCGTCGTCTGCGTAAATCATCCTCCCGGGATTCAACCAGGGAATCACTCTCTGACTCCGTTTCAGGAGAGCTTTCTGCTGATCCACATAGCCCCAAAGGCAAAAACGCTGTAAATGATAGGAAATCGCGGACCGGAAAAGGCAGAGGACTGCCCAAAAAAGGTGGAGCAGGTGGTAAAGGTGTTTGGGGTGCAGCTGGTATGGTATATGAGTTGGAGGAACCTGACGCTAAGGACCCCAACTATGATGAATCTGCACAGggAGATACAATATATGCAACAGTAGTACCAGAGCTGGAGGAGAGAGAACTTGAGAAGACCATCAACCCCATTGTGCAGGAGTATTTTGAGCATGGAGACACCAAAGAGGTTGAGATGCTGCTAAAAGAGCTGAACTTGGGCCACAACAGATATGAGTTCACCTCTCTGGCTGTGTCTCTGTCTCTGGAAGGCAAGGCCAGCCACAGAGAGCTCACATCACGTCTTCTCTCAGACCTCTCTGGTAAGGTGCTTTCTGAGAGAGACATGTCACATGCATTTGATAAAATGCTTAAGGAGCTGCCAGATCTCATCCTCGATACACCCGAGGCCCCACTGaTGCTTGGCCAATTTATTGCACGAGCCATTGCAGACCATGCATTACCCATGAGTTTTCTCGACTGTTACAAAGGCAAAGTGGATTGCGACCATGCCAGAGCTGCACTGGACAGAGCATCAGTTCTGCTCTCCATGAAGAGGGGAATCATGCGGCTTGATAATGTATGGGGAGTTGGTGGTGGCCAGAGGCCTGTCAAACATCTCATCAAAGAGATGAATCTTTTGCTAAAAGAGTATCTGGTGTCAGGTGAGCTCTCTGAGGCTGAACACTGTCTGCGAGATCTGGAGGTGCCACACTTTCATCATGAACTGGTCTATGAGGCTGTGGTTATGGTACTAGAGTCTACAGGTGATGCAGCTTTACAGATGATGGTCAAACTCCTCAAGTCATTCTGGCAAAGTGGACTAATTACTTTGGACCAGATGAACAGGGGTTTCCAACGTGTTTACGATGAGCTGCCAGAGATCAACCTGGATGTGCCTCATGCACAATCTATTATGGAAGCCTTTGTGGACCTTTGTTACCAGGAATCAGTCATCACTAAGCAGCTGAGAGATTCCTGTCCAACCAGGGGGCGCAAGCGCTTTGTTAGTGAGGGTGATGGAGGAATTGTGAAAAGTTAGAAGATTCCGAAGAGCTCCAGCAGGATCTTGATGCTGAACAAGTTGGGATCTCCTGCACCTCCCTGGAAATCTTTCCTCAATGTCTTCATTGCTCATCCTCCAAGTTCACACAGAAATATTCAGCCTCAGAAATGAGATTGTCTTGATGAAGAGTGACAACTGAGAAATCTTCTCTCCTCTATTATGGGCTTGCCTTAGTTGTTTTTTGAGTTTATGTGCATTTATACAGTATGCAACATAAATGGAAAAGAAGTGAGGAAATCAGCAGCTTCAGAGGGCCGTGAAATACAGTTTGGGTTGAGGGATTAATTTTGCTTTATCTTTTTCAGCTTaagttgttttttgttgtgttcTCTTGTTAGTGATGGCAGTGGTCGCTCATTCTTTTTTTGGCAGTGGACCTAATAAGGTATTAAATGAGTCAGGCTATTCAAATCAAGTACTTAATCAAACTGTTGGgccaaaatgtaatgttttatgaAGCGATTGGGGTCACTTCTATTggtttgcattttatttgcatgtttatcTTCAAATGTTTCTTATAATTGCTTAAAGTAACCATACCCCCCACATTCACAGATTCAGAAGCTTCCAGCAGAATactgcatactttttttttttttttcaaaaggatTATCAAGGCTCGTTGGTGATTTAGGCCAAATGCAAGTCAAACAGTTCTGATTATTGTTTCTGGCAGATTTTTACATCATTAAGTGTCTTTGTAGGTGTTAGTTAAAGGACAGAGGAGAGAGAGCATCATCACCTCTCGCTCAGGCTGATGTCTGTGACTGTTCCCATGTTCATTACTGTCTAAAGTTTTCTACCCTCTCTGTTTGATGGTGAAGTTTAGAACAATCGTTTATTTCAGTCCTGGTGTTTATTTGGAGAAAAGCAGTTTAATTATGTCAGTACAGCTGAGCCAACATTTTCTGAAAATATCTTTGCATATCACTTTTTAAGTGGTatatttttcagaaaattaccAACTCTCACAATCAATACTTGTGGTTTCAATAATGGCATAATGGGAGGAAATTACTAAATTTAACCAAAAGTACTTTTGTACAAGCAATCTTTTTTGTATCATTTTGTTCATGGGTCACTTTTtcaaatacattatttttgtcaAACAGCAGTTCCAGAGTTCCAGCATTGAATACATTTTGACActaataatttcaataaaaattCATAATGCTCG
>TCONS_00002037
TGAAGTTGAAAACACTGCCCCATGTTATTGGTCCCCCTCTGCAACGTGCTTGCTGCACTTctcatgcaaaaaatacattatttttgtagacatttttgacttaaattattaaatacgATATTTTCTCGATTCTTCTATTTTTCCTCAAGGACTGTTTACACCACCAGCAACATTACTGTTACATCTTTAGTCACAAGCGAGCCTTCAATTTAAGGCTTAGGAGGACGGTAAACAAGCGTACAATGGCGACTGAGATTGAAGCATGGACCACTGCCCCCCAAAACGATGGTGTATTCTCAGTTGAGCAACCGCGTGATGATGAGGATGGATCTTTTGGCAGTGAGGATCTAAATGAATTGGAGGTGAATGGGAACTGGACTCCTCAGGAAAAGGCCCTCCATGAGGCCAAACTTAAAGCTAAAGCAAAGCGTCGTCTGCGTAAATCATCCTCCCGGGATTCAACCAGGGAATCACTCTCTGACTCCGTTTCAGGAGAGCTTTCTGCTGATCCACATAGCCCCAAAGGCAAAAACGCTGTAAATGATAGGAAATCGCGGACCGGAAAAGGCAGAGGACTGCCCAAAAAAGGTGGAGCAGGTGGTAAAGGTGTTTGGGGTGCAGCTGGTATGGTATATGAGTTGGAGGAACCTGACGCTAAGGACCCCAACTATGATGAATCTGCACAGggAGATACAATATATGCAACAGTAGTACCAGAGCTGGAGGAGAGAGAACTTGAGAAGACCATCAACCCCATTGTGCAGGAGTATTTTGAGCATGGAGACACCAAAGAGGTTGAGATGCTGCTAAAAGAGCTGAACTTGGGCCACAACAGATATGAGTTCACCTCTCTGGCTGTGTCTCTGTCTCTGGAAGGCAAGGCCAGCCACAGAGAGCTCACATCACGTCTTCTCTCAGACCTCTCTGGTAAGGTGCTTTCTGAGAGAGACATGTCACATGCATTTGATAAAATGCTTAAGGAGCTGCCAGATCTCATCCTCGATACACCCGAGGCCCCACTGaTGCTTGGCCAATTTATTGCACGAGCCATTGCAGACCATGCATTACCCATGAGTTTTCTCGACTGTTACAAAGGCAAAGTGGATTGCGACCATGCCAGAGCTGCACTGGACAGAGCATCAGTTCTGCTCTCCATGAAGAGGGGAATCATGCGGCTTGATAATGTATGGGGAGTTGGTGGTGGCCAGAGGCCTGTCAAACATCTCATCAAAGAGATGAATCTTTTGCTAAAAGAGTATCTGGTGTCAGGTGAGCTCTCTGAGGCTGAACACTGTCTGCGAGATCTGGAGGTGCCACACTTTCATCATGAACTGGTCTATGAGGCTGTGGTTATGGTACTAGAGTCTACAGGTGATGCAGCTTTACAGATGATGGTCAAACTCCTCAAGTCATTCTGGCAAAGTGGACTAATTACTTTGGACCAGATGAACAGGGGTTTCCAACGTGTTTACGATGAGCTGCCAGAGATCAACCTGGATGTGCCTCATGCACAATCTATTATGGAAGCCTTTGTGGACCTTTGTTACCAGGAATCAGTCATCACTAAGCAGCTGAGAGATTCCTGTCCAACCAGGGGGCGCAAGCGCTTTGTTAGTGAGGGTGATGGAGGAATTGTGAAAAGTTAGAAGATTCCGAAGAGCTCCAGCAGGATCTTGATGCTGAACAAGTTGGGATCTCCTGCACCTCCCTGGAAATCTTTCCTCAATGTCTTCATTGCTCATCCTCCAAGTTCACACAGAAATATTCAGCCTCAGAAATGAGATTGTCTTGATGAAGAGTGACAACTGAGAAATCTTCTCTCCTCTATTATGGGCTTGCCTTAGTTGTTTTTTGAGTTTATGTGCATTTATACAGTATGCAACATAAATGGAAAAGAAGTGAGGAAATCAGCAGCTTCAGAGGGCCGTGAAATACAGTTTGGGTTGAGGGATTAATTTTGCTTTATCTTTTTCAGCTTaagttgttttttgttgtgttcTCTTGTTAGTGATGGCAGTGGTCGCTCATTCTTTTTTTGGCAGTGGACCTAATAAGGTATTAAATGAGTCAGGCTATTCAAATCAAGTACTTAATCAAACTGTTGGgccaaaatgtaatgttttatgaAGCGATTGGGGTCACTTCTATTggtttgcattttatttgcatgtttatcTTCAAATGTTTCTTATAATTGCTTAAAGTAACCATACCCCCCACATTCACAGATTCAGAAGCTTCCAGCAGAATactgcatactttttttttttttttcaaaaggatTATCAAGGCTCGTTGGTGATTTAGGCCAAATGCAAGTCAAACAGTTCTGATTATTGTTTCTGGCAGATTTTTACATCATTAAGTGTCTTTGTAGGTGTTAGTTAAAGGACAGAGGAGAGAGAGCATCATCACCTCTCGCTCAGGCTGATGTCTGTGACTGTTCCCATGTTCATTACTGTCTAAAGTTTTCTACCCTCTCTGTTTGATGGTGAAGTTTAGAACAATCGTTTATTTCAGTCCTGGTGTTTATTTGGAGAAAAGCAGTTTAATTATGTCAGTACAGCTGAGCCAACATTTTCTGAAAATATCTTTGCATATCACTTTTTAAGTGGTatatttttcagaaaattaccAACTCTCACAATCAATACTTGTGGTTTCAATAATGGCATAATGGGAGGAAATTACTAAATTTAACCAAAAGTACTTTTGTACAAGCAATCTTTTTTGTATCATTTTGTTCATGGGTCACTTTTtcaaatacattatttttgtcaAACAGCAGTTCCAGAGTTCCAGCATTGAATACATTTTGACActaataatttcaataaaaattCATAATGCTCG
>TCONS_00002038
TAAACTTATGCTGGCAGTGGCAAAGTTGTCTCTGGAAGAACTCAGCGGATAGAAAATGTTTTTCAAAGTCAAGTTTCTGATCGTTCACTAAGGCTTAGGAGGACGGTAAACAAGCGTACAATGGCGACTGAGATTGAAGCATGGACCACTGCCCCCCAAAACGATGGTGTATTCTCAGTTGAGCAACCGCGTGATGATGAGGATGGATCTTTTGGCAGTGAGGATCTAAATGAATTGGAGGTGAATGGGAACTGGACTCCTCAGGAAAAGGCCCTCCATGAGGCCAAACTTAAAGCTAAAGCAAAGCGTCGTCTGCGTAAATCATCCTCCCGGGATTCAACCAGGGAATCACTCTCTGACTCCGTTTCAGGAGAGCTTTCTGCTGATCCACATAGCCCCAAAGGCAAAAACGCTGTAAATGATAGGAAATCGCGGACCGGAAAAGGCAGAGGACTGCCCAAAAAAGGTGGAGCAGGTGGTAAAGGTGTTTGGGGTGCAGCTGGTATGGTATATGAGTTGGAGGAACCTGACGCTAAGGACCCCAACTATGATGAATCTGCACAGggAGATACAATATATGCAACAGTAGTACCAGAGCTGGAGGAGAGAGAACTTGAGAAGACCATCAACCCCATTGTGCAGGAGTATTTTGAGCATGGAGACACCAAAGAGGTTGAGATGCTGCTAAAAGAGCTGAACTTGGGCCACAACAGATATGAGTTCACCTCTCTGGCTGTGTCTCTGTCTCTGGAAGGCAAGGCCAGCCACAGAGAGCTCACATCACGTCTTCTCTCAGACCTCTCTGGTAAGGTGCTTTCTGAGAGAGACATGTCACATGCATTTGATAAAATGCTTAAGGAGCTGCCAGATCTCATCCTCGATACACCCGAGGCCCCACTGaTGCTTGGCCAATTTATTGCACGAGCCATTGCAGACCATGCATTACCCATGAGTTTTCTCGACTGTTACAAAGGCAAAGTGGATTGCGACCATGCCAGAGCTGCACTGGACAGAGCATCAGTTCTGCTCTCCATGAAGAGGGGAATCATGCGGCTTGATAATGTATGGGGAGTTGGTGGTGGCCAGAGGCCTGTCAAACATCTCATCAAAGAGATGAATCTTTTGCTAAAAGAGTATCTGGTGTCAGGTGAGCTCTCTGAGGCTGAACACTGTCTGCGAGATCTGGAGGTGCCACACTTTCATCATGAACTGGTCTATGAGGCTGTGGTTATGGTACTAGAGTCTACAGGTGATGCAGCTTTACAGATGATGGTCAAACTCCTCAAGTCATTCTGGCAAAGTGGACTAATTACTTTGGACCAGATGAACAGGGGTTTCCAACGTGTTTACGATGAGCTGCCAGAGATCAACCTGGATGTGCCTCATGCACAATCTATTATGGAAGCCTTTGTGGACCTTTGTTACCAGGAATCAGTCATCACTAAGCAGCTGAGAGATTCCTGTCCAACCAGGGGGCGCAAGCGCTTTGTTAGTGAGGGTGATGGAGGAATTGTGAAAAGTTAG
>TCONS_00002039
GGTCCCCCTCTGCAACGTGCTTGCTGCACTTctcatgcaaaaaatacattatttttgtagacatttttgacttaaattattaaatacgATATTTTCTCGATTCTTCTATTTTTCCTCAAGGACTGTTTACACCACCAGCAACATTACTGTTACATCTTTAGTCACAAGCGAGCCTTCAATTTAAGGCTTAGGAGGACGGTAAACAAGCGTACAATGGCGACTGAGATTGAAGCATGGACCACTGCCCCCCAAAACGATGGTGTATTCTCAGTTGAGCAACCGCGTGATGATGAGGATGGATCTTTTGGCAGTGAGGATCTAAATGAATTGGAGGTGAATGGGAACTGGACTCCTCAGGAAAAGGCCCTCCATGAGGCCAAACTTAAAGCTAAAGCAAAGCGTCGTCTGCGTAAATCATCCTCCCGGGATTCAACCAGGGAATCACTCTCTGACTCCGTTTCAGGAGAGCTTTCTGCTGATCCACATAGCCCCAAAGGCAAAAACGCTGTAAATGATAGGAAATCGCGGACCGGAAAAGGCAGAGGACTGCCCAAAAAAGGTGGAGCAGGTGGTAAAGGTGTTTGGGGTGCAGCTGGTATGGTATATGAGTTGGAGGAACCTGACGCTAAGGACCCCAACTATGATGAATCTGCACAGggAGATACAATATATGCAACAGTAGTACCAGAGCTGGAGGAGAGAGAACTTGAGAAGACCATCAACCCCATTGTGCAGGAGTATTTTGAGCATGGAGACACCAAAGAGGTTGAGATGCTGCTAAAAGAGCTGAACTTGGGCCACAACAGATATGAGTTCACCTCTCTGGCTGTGTCTCTCTCTCTGAGGCTGAACACTGTCTGCGAGATCTGGAGGTGCCACACTTTCATCATGAACTGGTCTA

Function

symbol description
pdcd4a Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human PDCD4 (programmed cell death 4).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1920 Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human PDCD4 (programmed cell death 4).

Ensembl:

ensembl_id ENSDARG00000021702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002036 False 2620 mRNA 0.43 11 26046148 26062798
TCONS_00002037 False 2853 mRNA 0.42 12 26046148 26063188
TCONS_00002038 False 1524 mRNA 0.48 12 26047355 26071535
TCONS_00002039 True 901 processed_transcript 0.46 7 26051481 26063159

Neighbor

gene id symbol gene type direction distance location
XLOC_001253 gpank1 coding downstream 564 26036123 ~ 26045584 (-)
XLOC_001252 si:ch211-145b13.6 coding downstream 18811 26025292 ~ 26027337 (-)
XLOC_001251 si:ch211-145b13.5 coding downstream 22470 26011479 ~ 26023678 (-)
XLOC_001250 synpo2b coding downstream 79737 25959084 ~ 25966411 (-)
XLOC_001249 myoz2b coding downstream 109469 25917591 ~ 25936679 (-)
XLOC_001255 cdkn2a/b coding upstream 56283 26127818 ~ 26131088 (-)
XLOC_001256 NA coding upstream 111864 26183399 ~ 26185720 (-)
XLOC_001257 NA coding upstream 171970 26243505 ~ 26248287 (-)
XLOC_001258 cxxc4 coding upstream 179194 26250729 ~ 26294995 (-)
XLOC_001259 CU570873.1 coding upstream 278991 26350526 ~ 26350641 (-)
XLOC_001247 CU929073.1 non-coding downstream 182509 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 331654 25709312 ~ 25714494 (-)
XLOC_001242 AL935184.2 non-coding downstream 487861 25555725 ~ 25558287 (-)
XLOC_001235 BX511127.1 non-coding downstream 1220885 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1439386 24602332 ~ 24606762 (-)
XLOC_001263 NA non-coding upstream 483345 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 501894 26573429 ~ 26575260 (-)

Expression


Co-expression Network