XLOC_001255 (cdkn2a/b)


Basic Information

Item Value
gene id XLOC_001255
gene name cdkn2a/b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26127818 ~ 26131088 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002040
ATGATGAACGTCGAGGATGAACTGACCACAGCAGCAGCCACCGGAAACATTTCCCATGTTCAGTTTTTACTTTCTAACGGAGTGAATGCCAATGTGGTTAACAAATTTAGAAGAACGCCTATACAGGTGATGATGATGGGTAACGCACCTTTGGCTCTTGTGCTGCTGGAACAGGGAGCGGACCCTAATGTGCCTGACCCCGACACAGGGAGCACACCTCTGCACGACGCTGCCAGAACCGGATTCATTGACACCGTGCGGCTTTTAATCCGCTTCGGCGCCGACCCCAATACAAAAGATCACTGCGATTTACGACCAGTGGATGTGGCACAACAGACTGGCAACGTAGACGTGGTTGAATTACTCAAtcgtGCACTAAAACAATTGTAA
>TCONS_00002041
ATGATGAACGTCGAGGATGAACTGACCACAGCAGCAGCCACCGGAAACATTTCCCATGTTCAGTTTTTACTTTCTAACGGAGTGAATGCCAATGTGGTTAACAAATTTAGAAGAACGCCTATACAGGTGATGATGATGGGTAACGCACCTTTGGCTCTTGTGCTGCTGGAACAGGGAGCGGACCCTAATGTGCCTGACCCCGACACAGGGAGCACACCTCTGCACGACGCTGCCAGAACCGGATTCATTGACACCGTGCGGCTTTTAATCCGCTTCGGCGCCGACCCCAATACAAAAGATCACTGCGATTTACGACCAGTGGATGTGGCACAACAGACTGGCAACGTAGACGTGGTTGAATTACTCAAtcgtgtttaa

Function

symbol description
cdkn2a/b Is expressed in digestive system; eye; heart; and telencephalon. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); carcinoma (multiple); hematologic cancer (multiple); melanoma (multiple); and nervous system cancer (multiple). Orthologous to human CDKN2A (cyclin dependent kinase inhibitor 2A) and CDKN2B (cyclin dependent kinase inhibitor 2B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-306 Is expressed in digestive system; eye; heart; and telencephalon. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); carcinoma (multiple); hematologic cancer (multiple); melanoma (multiple); and nervous system cancer (multiple). Orthologous to human CDKN2A (cyclin dependent kinase inhibitor 2A) and CDKN2B (cyclin dependent kinase inhibitor 2B).

Ensembl:

ensembl_id ENSDARG00000037262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002040 False 390 mRNA 0.49 3 26127818 26131088
TCONS_00002041 True 378 mRNA 0.50 2 26129053 26131088

Neighbor

gene id symbol gene type direction distance location
XLOC_001254 pdcd4a coding downstream 56283 26046148 ~ 26071535 (-)
XLOC_001253 gpank1 coding downstream 82234 26036123 ~ 26045584 (-)
XLOC_001252 si:ch211-145b13.6 coding downstream 100481 26025292 ~ 26027337 (-)
XLOC_001251 si:ch211-145b13.5 coding downstream 104140 26011479 ~ 26023678 (-)
XLOC_001250 synpo2b coding downstream 161407 25959084 ~ 25966411 (-)
XLOC_001256 NA coding upstream 52311 26183399 ~ 26185720 (-)
XLOC_001257 NA coding upstream 112417 26243505 ~ 26248287 (-)
XLOC_001258 cxxc4 coding upstream 119641 26250729 ~ 26294995 (-)
XLOC_001259 CU570873.1 coding upstream 219438 26350526 ~ 26350641 (-)
XLOC_001260 ppa2 coding upstream 258065 26389153 ~ 26398361 (-)
XLOC_001247 CU929073.1 non-coding downstream 264179 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 413324 25709312 ~ 25714494 (-)
XLOC_001242 AL935184.2 non-coding downstream 569531 25555725 ~ 25558287 (-)
XLOC_001235 BX511127.1 non-coding downstream 1302555 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1521056 24602332 ~ 24606762 (-)
XLOC_001263 NA non-coding upstream 423792 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 442341 26573429 ~ 26575260 (-)

Expression


Co-expression Network