RNA id: TCONS_00002041


Basic Information

Item Value
RNA id TCONS_00002041
length 378
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_001255
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26127818 ~ 26131088 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAACGTCGAGGATGAACTGACCACAGCAGCAGCCACCGGAAACATTTCCCATGTTCAGTTTTTACTTTCTAACGGAGTGAATGCCAATGTGGTTAACAAATTTAGAAGAACGCCTATACAGGTGATGATGATGGGTAACGCACCTTTGGCTCTTGTGCTGCTGGAACAGGGAGCGGACCCTAATGTGCCTGACCCCGACACAGGGAGCACACCTCTGCACGACGCTGCCAGAACCGGATTCATTGACACCGTGCGGCTTTTAATCCGCTTCGGCGCCGACCCCAATACAAAAGATCACTGCGATTTACGACCAGTGGATGTGGCACAACAGACTGGCAACGTAGACGTGGTTGAATTACTCAAtcgtgtttaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-306 Is expressed in digestive system; eye; heart; and telencephalon. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); carcinoma (multiple); hematologic cancer (multiple); melanoma (multiple); and nervous system cancer (multiple). Orthologous to human CDKN2A (cyclin dependent kinase inhibitor 2A) and CDKN2B (cyclin dependent kinase inhibitor 2B).

Ensembl:

ensembl_id ENSDART00000054209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002019 lncRNA downstream 265414 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 414559 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 452954 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 570766 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 642634 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00003420 lncRNA upstream 52311 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 52311 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 112417 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 264028 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 423792 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002038 mRNA downstream 57518 26047355 ~ 26071535 (-) False XLOC_001254
TCONS_00002037 mRNA downstream 65865 26046148 ~ 26063188 (-) False XLOC_001254
TCONS_00002036 mRNA downstream 66255 26046148 ~ 26062798 (-) False XLOC_001254
TCONS_00002035 mRNA downstream 83488 26039115 ~ 26045565 (-) True XLOC_001253
TCONS_00002034 mRNA downstream 84046 26036147 ~ 26045007 (-) False XLOC_001253
TCONS_00002043 mRNA upstream 119641 26250729 ~ 26294995 (-) False XLOC_001258
TCONS_00002045 mRNA upstream 122104 26253192 ~ 26292897 (-) False XLOC_001258
TCONS_00002046 mRNA upstream 158270 26289358 ~ 26292897 (-) False XLOC_001258
TCONS_00002047 mRNA upstream 158270 26289358 ~ 26293203 (-) True XLOC_001258
TCONS_00002050 mRNA upstream 259236 26390324 ~ 26398361 (-) False XLOC_001260
TCONS_00002039 other downstream 65894 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002024 other downstream 192412 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002016 other downstream 417250 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 452713 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 571123 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002042 other upstream 52651 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 121820 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 219438 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 258065 26389153 ~ 26394460 (-) False XLOC_001260
TCONS_00002051 other upstream 260667 26391755 ~ 26398274 (-) False XLOC_001260

Expression Profile

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