RNA id: TCONS_00002047


Basic Information

Item Value
RNA id TCONS_00002047
length 849
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_001258
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26250729 ~ 26294995 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTAATCTCAACAATGCACTTTGCATTGAAAGCGGCCAGAGCACCGACGTGTCACTCTTGCAAAAGGATAATCTTCAGGATGGTGGATTAAGCCAGCTGTTGGATTACAATGCAGAAATGGAAAGATACAGGTCATTTGCAAACTTTTACAAAACCAATGGAGCATTTCCACAGACTGCTAAGATTGCCCGCATAACGACACCAATTTTTCCCAGCGCCAGAATTGGCGTGTCCCCTTGGAACTGTGATAACGGCATGCTCTGGGGAAGGAAATCAGCAGCAATAAACCCTAATAGGACCAGCATGCATAGAAACGACTCCCAAAGGCCGGGGAAACCTGGCGTGCCGCCAGAGACGCTGCAAATGGCAAATAATAATTTCCTCTCTAGCTTATCCCCTGAACACTGCAGACCTTTAGCAGGAGAATGCATGAACAAGCTGAAATGCGGTGCTGCTGAAGCAGAGATAATGAATCTCCCGGAACGTGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCCGCATCCAGCGGAAACCCAgcgaaaaagaaaaggaaaaggtgTGGGGTCTGTGCGCCCTGCAGGAGGCTAATCAACTGTGGAGTGTGCAGCAGTTGTCGGAACCGTAAGACGGGCCACCAGATCTGCAAGTTTCGGAAATGCGAGGAGCTAAAAAAGAAGCCTGGCTCATCACTAGAGGTGAGACGACGATGGTTTATGtaa

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-179 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

Ensembl:

ensembl_id ENSDART00000180140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002953 lncRNA downstream 41071 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00003420 lncRNA downstream 103638 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA downstream 103638 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002019 lncRNA downstream 425719 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 574864 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002053 lncRNA upstream 101913 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 261677 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002955 lncRNA upstream 280226 26573429 ~ 26574741 (-) False XLOC_001264
TCONS_00002058 lncRNA upstream 280232 26573435 ~ 26575260 (-) True XLOC_001264
TCONS_00002061 lncRNA upstream 369274 26662477 ~ 26663423 (-) True XLOC_001265
TCONS_00002040 mRNA downstream 158270 26127818 ~ 26131088 (-) False XLOC_001255
TCONS_00002041 mRNA downstream 158270 26129053 ~ 26131088 (-) True XLOC_001255
TCONS_00002038 mRNA downstream 217823 26047355 ~ 26071535 (-) False XLOC_001254
TCONS_00002037 mRNA downstream 226170 26046148 ~ 26063188 (-) False XLOC_001254
TCONS_00002036 mRNA downstream 226560 26046148 ~ 26062798 (-) False XLOC_001254
TCONS_00002050 mRNA upstream 97121 26390324 ~ 26398361 (-) False XLOC_001260
TCONS_00002055 mRNA upstream 145395 26438598 ~ 26444075 (-) True XLOC_001261
TCONS_00002056 mRNA upstream 245243 26538446 ~ 26544268 (-) False XLOC_001262
TCONS_00002059 mRNA upstream 367166 26660369 ~ 26664840 (-) False XLOC_001265
TCONS_00002062 mRNA upstream 377625 26670828 ~ 26676391 (-) False XLOC_001267
TCONS_00002042 other downstream 103764 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002039 other downstream 226199 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002024 other downstream 352717 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002016 other downstream 577555 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 613018 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002048 other upstream 57323 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 95950 26389153 ~ 26394460 (-) False XLOC_001260
TCONS_00002051 other upstream 98552 26391755 ~ 26398274 (-) False XLOC_001260
TCONS_00002052 other upstream 101162 26394365 ~ 26398303 (-) False XLOC_001260
TCONS_00002054 other upstream 145394 26438597 ~ 26439350 (-) False XLOC_001261

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017909 True 471 mRNA 0.54 2 CM030131.1 28568960 ~ 28569655 (-)