XLOC_001261 (ints12)


Basic Information

Item Value
gene id XLOC_001261
gene name ints12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26438597 ~ 26444075 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002054
TACAGGATGGGCCGCCTTCACCAAGGCAACCTCAAATGTAGGACCTTCCAGCACCAAGTTAAGCACCAGTCAATCAGGTAAACAGGTGTTGAGCCGCTCAGCGAGTGGAGATAGTTTGGGGAAAATGACTGTGACGGGATCATTGTCACCTGGAGCTGCACCTTCTAGCAGCCTGGGTGGCAATGGTGGGTCAGGAGGCAATGGAGCGGGCAACGGTGGCAATAGTGCTGGGAGTAGCAGCAGCAgtggcaacaacaacaacaatggagCAAAAGCCTCGGCTGATGGCAAGGCACCCACTTCCCAAGAGTCTCAGCTCAATGCTATGAAACGCCTGCAGATGGTGAAGAAGAAAGCGGCACAGAAAAAACTGAAGAAATGAGGAGGAAGTAGGCAGAATGTCACGATAAAGAGCACGTCAAATCCTGTTTTCAGATCGCatacttgaatttaaatgttaCTGGTCGTTCTGAAGCGCTTTGGTTTGGAGATGTGTCTCTTTCTTTCTAAACCAGCCACATTACTGAAAACAAGCTGCTCCTTTTaatgatgtgttgaataaataacaccttttttt
>TCONS_00002055
TGGCCACTAAGCCACGCCCTATTGAGGTCCCCATACTTTTCAAGCGCTTTCTTTCTACTTGCTCTATTTTAATTCGATACTATAGTCGGATCATTTCAAGCATTGCTAAGTTAGTTAATTTCTGCTAAGGataatatcttgtttttttttacggTTTATAAAAACGTTCCTTAAACAAAAGCTTGAGCACAATCCGGTGTCAGTAAGTTCATGTTGCTTTTGTTAGCTCAGAAAGACTAGATATTGTAGAGTCTGAAATGAAGCTTTTCTAGTGTTATCCGAGAATATAACATCGTAAACTCCATAAGTAGAGGGCCGGGTCATTTTCTTATGTTAAATTAGATAATAATCGCTAAACAATGGCTGGGACAGTAAGTCTAGAGTTAGACCCTATCTTTCTGAAGGGACTGGGGTATCTTCACTCCAAGAGCAAAGACTCGGCAGAGAAACTCAAGGCCCTGCTAGATGAGTCTTTAGCCAGAGGCAGTGACTCCATCTATAGGAATTCAATTAAGGAAGCTGAAGTGAGCAAAGTGTCATTgccaaaaatgacaaaacaagaCTCCAAATCCTCCTCAAGTTCCTCAGCGTCATCAtccatcaccaccaccagcagcagtaAATCAAGCACCTCAGAGAAGTCCAAGAAAGAGAGCGAGAAAagaactttggaaaaaATTAGGGTTGATCCTGGAGAAGGAGTGGAGCCGCCTAAGAAACCTCGTTTAGAGAAGCAGGACAGTCATTCCTCTCCGATTGCTTTTCAAACCAAGGACATTCCTATTCCAGATTTCACAGATATTGATGAAACCAACGCTGATGACTTTGCCATGGAAATGGGTCTTGCTTGTGTGGTTTGTCGACAAATGACCGTCACTTCTGGGAATCAGCTTGTGGAGTGTCAAGAATGTCATAATCTTTATCATCAAGAGTGTCACAAACCTCAGGTTACTGACAAGGATGTGAATGACCCGCGACTGGTGTGGTACTGTGCTCGGTGCACCAGGCAAATGAAACGAATGGCCCAAAAGACTCAGAAACCACCCCAAAAGCCAGCTCCTGCTTTGGCAACAACAGTACCTTTGTTGAAAGATCCGCTAGTCAAGAAAGCTGAACTAAAGCCAAAACCTGAAACGACAGGTTCATTCCAGGCCTTTAAGAGAACAGAAGTAAAGGCAACTGCAGCATCAGGAAACTCATCCAGCAGCAGTAGCAGCAGCTCGTCTTTGCCTCCGGGTCTTACAGGATGGGCCGCCTTCACCAAGGCAACCTCAAATGTAGGACCTTCCAGCACCAAGTTAAGCACCAGTCAATCAGGTAACAGTAAAACATCCCCAGCTGCCTCAGGCTCCAAACCTGTGGGTCTCTCTGCTCTGGCCAATGTTAAACCAGCTCTGGCCACTAAACCTTCAGGAGGAAGCAGTGCCGGAAGTGGCAATGGAAACAATGGCTCTGGTACAGTACCCTTAAAAGCACCTCCTCCGCTTACTCTAGGTAAACAGGTGTTGAGCCGCTCAGCGAGTGGAGATAGTTTGGGGAAAATGACTGTGACGGGATCATTGTCACCTGGAGCTGCACCTTCTAGCAGCCTGGGTGGCAATGGTGGGTCAGGAGGCAATGGAGCGGGCAACGGTGGCAATAGTGCTGGGAGTAGCAGCAGCAgtggcaacaacaacaacaatggagCAAAAGCCTCGGCTGATGGCAAGGCACCCACTTCCCAAGAGTCTCAGCTCAATGCTATGAAACGCCTGCAGATGGTGAAGAAGAAAGCGGCACAGAAAAAACTGAAGAAATGAGGAGGAAGTAGGCAGAATGTCACGATAAAGAGCACGTCAAATCCTGTTTTCAGATCGCatacttgaatttaaatgttaCTGGTCGTTCTGAAGCGCTTTGGTTTGGAGATGTGTCTCTTTCTTTCTAAACCAGCCACATTACTGAAAACAAGCTGCTCCTTTTaatgatgtgttgaataaataacacctttttt

Function

symbol description
ints12 Predicted to enable metal ion binding activity. Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS12 (integrator complex subunit 12).

GO:

id name namespace
GO:0034472 snRNA 3'-end processing biological_process
GO:0016180 snRNA processing biological_process
GO:0032039 integrator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040625-178 Predicted to enable metal ion binding activity. Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS12 (integrator complex subunit 12).

Ensembl:

ensembl_id ENSDARG00000091678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002054 False 577 processed_transcript 0.48 2 26438597 26439350
TCONS_00002055 True 1993 mRNA 0.45 6 26438598 26444075

Neighbor

gene id symbol gene type direction distance location
XLOC_001260 ppa2 coding downstream 40236 26389153 ~ 26398361 (-)
XLOC_001259 CU570873.1 coding downstream 87956 26350526 ~ 26350641 (-)
XLOC_001258 cxxc4 coding downstream 143602 26250729 ~ 26294995 (-)
XLOC_001257 NA coding downstream 190310 26243505 ~ 26248287 (-)
XLOC_001256 NA coding downstream 252877 26183399 ~ 26185720 (-)
XLOC_001262 si:ch211-202n12.2 coding upstream 94371 26538446 ~ 26544268 (-)
XLOC_001263 NA coding upstream 110805 26554880 ~ 26595059 (-)
XLOC_001264 NA coding upstream 129354 26573429 ~ 26575260 (-)
XLOC_001265 anp32b coding upstream 216294 26660369 ~ 26664840 (-)
XLOC_001266 NA coding upstream 221683 26665758 ~ 26669757 (-)
XLOC_001247 CU929073.1 non-coding downstream 574958 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 724103 25709312 ~ 25714494 (-)
XLOC_001271 NA non-coding upstream 574591 27018666 ~ 27024844 (-)
XLOC_001274 NA non-coding upstream 1300723 27744798 ~ 27750558 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10949572_10953122 NA coding CI01000300 null 10949485 ~ 10953122 (-)