XLOC_001260 (ppa2)


Basic Information

Item Value
gene id XLOC_001260
gene name ppa2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26389153 ~ 26398361 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002049
TGAGGATGTGAGAAAGATTAAGCCTGGACATCTTGAGGCTACAGTGGAttggtttaaaaaatataaagtacCTGATGGAAAACCTGAAAACCAGTTTGCATTCAATGGACAGTTTAAGGATAAGGACTTTGCCATAGAAGTCATAAAATCAACACATAGCTACTGGAAAGCGTTGGTGATGCGAAAAAAGATGAAAGATGATGAAATAGTTTGTCAAAACTCGTCCTTGTGCGATAGTCCCTTCAAATGTAGTGATGAAGAAGCCAGTGCTGTGGTTGAaactACCGCAGAATATGGGGAACCCCTTCCTGTATCTCCTGAAGGATTGGCAAATTAACTGGGATTacaagatctgttccaactctgtGATCCAATTGCACTTCAAGATGCAGGGGACCTGGACGTCAAACCAAGGTTATTTTGTACAGTAACTTAGCTAAAAATAGATCTCTATACTGCAGCATACTTATCCGTTTGGTGGGCTCCTGTCAAAAAAAGCACGTGTTAAACGTGCTTTAAAGAGGTGCTTCCTCAAAGGATGTTAACACTTTATCATAAAGGTCCTTTAACTTCgtattaataatactaaaaataataatttaaataataacaattatagcAATAAAAATTTCAAAGttaatatgaattaattcattaattttcttttgggcttagtccctttattaatcaggggtcgccacagtggaatcaaccgccaacttatagcatatgttttacccagcggatacccttccagctgcaacccatcactgggaaacacccatacactctcattcctacacatatactacggac
>TCONS_00002050
AATTACGTTCATGTGGCGATAGGTGGCAGTATGGAACAACTAAAAGATTTTGTGACGATGAATGTGTGAGACATTCACTAACAATCAGGAACCGATGTGAGTGGATGTAAATAATGTGTTCAGTTATTATTCGTACTGCGACGAAGTTTTCTGCTGCTTTTATCCCTACACAGTCCTCTCGAAAAAGCAAGTCTTTAATTTCTGCAGCTTCCGTTCATATGAGAAAAATGGTGCATTACTTAACAGAGCAGAGAGGACGTCCAAACTCGACTGACTACAGGATTTACTTAAAAACTTCAGATGGGAAATACATATCCCCCTTCCATGACATCCCTCTGTATGTTGCTGATGAACAGGACTGTGTTGTTCCaccaaagaaaatgaaaatgaatgggatAATTTTTAATATGGTCGTGGAAGTACCTCGTTGGTCAAATGCTAAGATGGAgATAGCTACAAAGGAACCATTAAACCCAATCAGGCAAGATGTAAAGAAAGGCAAGCTACGATATGTAGCTAATGTTTTTCCACACAAAGGATACATTTGGAACTATGGTGCACTTCCACAGACATGGGAAGATCCCAAGCACACTGACAAGGAAACCATGTGCTGTGGAGACAATGACCCAATAGATGTGTGCGAGATTGGCTCCAAGGTGTGTGTTACGGGGCAGGTGATTCAGGTTAAAGTTCTTGGAATTCTGGGTTTGATAGATGAAGGAGAGACTGACTGGAAAGTAATAGCCATCAATGTAGAGGACCCTGATTCATCAAGCCTTAACAGTATTGAGGATGTGAGAAAGATTAAGCCTGGACATCTTGAGGCTACAGTGGAttggtttaaaaaatataaagtacCTGATGGAAAACCTGAAAACCAGTTTGCATTCAATGGACAGTTTAAGGATAAGGACTTTGCCATAGAAGTCATAAAATCAACACATAGCTACTGGAAAGCGTTGGTGATGCGAAAAAAGATGAAAGATGATGAAATAGTTTGTCAAAACTCGTCCTTGTGCGATAGTCCCTTCAAATGTAGTGATGAAGAAGCCAGTGCTGTGGTTGAaactACCGCAGAATATGGGGAACCCCTTCCTGTATCTCCTGAAGTGGACAAGTGGCACTTCCTCTAAAAATGACAAACTTTTCATATTTGTGAAGTGATTACGATCATAAGAAGATAGAAAAGAGCAAAAGCTGCCATTACATGGGTATTGTGTAATGTACtcgatgtatttttgttttattaatgttttatttttaaaacattgcttAATTTATTAGTACAAGGAGCAAGCACTTGTAAATAATTGATCACTTATGAAGTGTATTTTCTTACCaatcatttgtgtatttttgcagATTGTTTCTGTACATGGTTAttgttatttacatatttacaaaatacatttcTTTCAGTGCCAAAATCATGTTACATTTCATACTTTGAAGTTTGAATTATTAACAATCTTTGCAACTTGAGTTTCTAAGTAAGactgtaataaatgtttattattaaggACACATTTAGTATTTGTTTTCAGAAGTGTTCACGGTAGCTGGTTGCAACAAACAAACTAATCAGACCAACTGTTGCAGGTTAGGGTTGTGTTTAGTTTTAAAGGCCGTGTTTGGTGATcatattctttaaaaataaactttttttttgttttgcattccaGTGTTCCagcaatttatttctttattacgTACATTTAATTGTCTTCCAGTTGTTACCAGATAACCTATAACTTTTACTCACAAATGGTCCATAGCAAAGCCATTACCATGCCATGAACATTTTGGTGATTTGTTTTGTACATGgggagtttttaaataaaaaagttaaacaattaaatcgtttttaaagaaataaaagattacaaactggattttttttttttgtattgaaaaaaaaacattacttgttATGTTTGGTTCTGAATCATAAATGAAATGGTTTATTCAGTGTTTTCAATTTAAAGTGATGAAATGTATCAAAAGGTCAAGTAGTTTTCAtcagagaatgttttttttttgaagcttTACATTTCTATTTTGAAAAGGTTgtgaaatattaaacattttgatGCTTCATTACATTTTACCTCGCACTCTTTATTAGtgtaaactaaattgttttagtaaATTGTGAAGCCTGCCTTTTATGATTTTAGTTATTGTGGCATTACTGAGCAGTTTTTGAATGCTGAATATGACCAGCACAAATATAATTTCATCATTCTAAATACacactgcttgatttgacctttttttaataagttaGTAGGAAATAACTTGTATGAGCAATTACTTATGCACTTGTATAAAGTTTTACTTTATCAATCTTTGACTCGTTAAGTGAGCTGAATTAACACAAAGATTTGAAatgcaaaataatacaattatgagAACATTGTGCAGAACAAGTTTTCACTTTCAAATCAAACCGTGAGTTTTAAATCTCTTCATCACTTCTGAACTCCAACAATACatggtttaattttttaagtattaGGTCAGTTTGAAGACAATATGTGCATTTCTATTTGCATTTTTGAGtaaagtggacaagctcaaaatgTGTCATGCCttgtttacacctgtatttaatGTTATTCACTCATGATTTGATCGGAAGAAATAAACAGCTGTAAGCTACCCAAAGTGTATTAGggccaaaaaatataaaaaataaatttagtagTTTGAGCAATTTAGTTCAATTTCAAGTAAAATaccaaaataaatgtacacaataaagtctgtgttttgagaaaaataatttcaataaaaatgtttaaataaaactttGAGAAAACTAattacatttcaagaatatgcttttgtgtgtgtgtgcgcgtgtgtgtgtttattacatTTCAAGAAAGAAAACATGTTGAGAATAAATAGAGGGTTTTTAGAAAGGACTTATAAGAGCTCAATTGTGCTT
>TCONS_00002051
GGAACCGATGTGAGTGGATGTAAATAATGTGTTCAGTTATTATTCGTACTGCGACGAAGTTTTCTGCTGCTTTTATCCCTACACAGTCCTCTCGAAAAAGCAAGTCTTTAATTTCTGCAGCTTCCGTTCATATGAGAAAAATGGTGCATTACTTAACAGAGCAGAGAGGACGTCCAAACTCGACTGACTACAGGATTTACTTAAAAACTTCAGATGGGAAATACATATCCCCCTTCCATGACATCCCTCTGTATGTTGCTGATGAACAGGTTAGCATAATGACTGTGTTGTTCCaccaaagaaaatgaaaatgaatgggatAATTTTTAATATGGTCGTGGAAGTACCTCGTTGGTCAAATGCTAAGATGGAgATAGCTACAAAGGAACCATTAAACCCAATCAGGCAAGATGTAAAGAAAGGCAAGCTACGATATGTAGCTAATGTTTTTCCACACAAAGGATACATTTGGAACTATGGTGCACTTCCACAGACATGGGAAGATCCCAAGCACACTGACAAGGAAACCATGTGCTGTGGAGACAATGACCCAATAGATGTGTGCGAGATTGGCTCCAAGGTGTGTGTTACGGGGCAGGTGATTCAGGTTAAAGTTCTTGGAATTCTGGGTTTGATAGATGAAGGAGAGACTGACTGGAAAGTAATAGCCATCAATGTAGAGGACCCTGATTCATCAAGCCTTAACAGTATTGAGGATGTGAGAAAGATTAAGCCTGGACATCTTGAGGCTACAGTGGAttggtttaaaaaatataaagtacCTGATGGAAAACCTGAAAACCAGTTTGCATTCAATGGACAGTTTAAGGATAAGGACTTTGCCATAGAAGTCATAAAATCAACACATAGCTACTGGAAAGCGTTGGTGATGCGAAAAAAGATGAAAGATGATGAAATAGTTTGTCAAAACTCGTCCTTGTGCGATAGTCCCTTCAAATGTAGTGATGAAGAAGCCAGTGCTGTGGTTGAaactACCGCAGAATATGGGGAACCCCTTCCTGTATCTCCTGAAGTGGACAAGTGGCACTTCCTCTAAAAATGACAAACTTTTCATATTTGTGAAGTGATTACGATCATAAGAAGATAGAAAAGAGCAAAAGCTGCCATTACATGGGTATTGTGTAATGTACtcgatgtatttttgttttattaatgttttatttttaaaacattgcttAATTTATTAGTACAAGGAGCAAGCACTTGTAAATAATTGATCACTTATGAAGTGTATTTTCTTACCaatcatttgtgtatttttgcagATTGTTTCTGTACATGGTTAttgttatttacatatttacaaaatacatttcTTTCAGTGCCAAAATCATGTTACATTTCATACTTTGAAGTTTGAATTATTAACAATCTTTGCAACTTGAGTTTCTAAGTAAGactgtaataaatgtttattattaaggA
>TCONS_00002052
TGAATGTGTGAGACATTCACTAACAATCAGGAACCGATCTTCCGTTCATATGAGAAAAATGGTGCATTACTTAACAGAGCAGAGAGGACGTCCAAACTCGACTGACTACAGGATTTACTTAAAAACTTCAGATGGGAAATACATATCCCCCTTCCATGACATCCCTCTGTATGTTGCTGATGAACAGGACTGTGTTGTTCCaccaaagaaaatgaaaatgaatgggatAATTTTTAATATGGTCGTGGAAGTACCTCGTTGGTCAAATGCTAAGATGGAgATAGCTACAAAGGAACCATTAAACCCAATCAGGCAAGATGTAAAGAAAGGCAAGCTACGATATGTAGCTAATGTTTTTCCACACAAAGGATACATTTGGAACTATGGTGCACTTCCACAGACATGGGAAGATCCCAAGCACACTGACAAGGAAACCATGTGCTGTGGAGACAATGACCCAATAGATGTGTGCGAGATTGGCTCCAAGGTGTGTGTTACGGGGCAGGTGATTCAGGTTAAAGTTCTTGGAATTCTGGGTTTGATAGATGAAGGAGAGACTGACTGGAAAGTAATAGCCATCAATGTAGAGGACCCTGATTCATCAAGCCTTAACAGTATTGAGGATGTGAGAAAGATTAAGCCTGGACATCTTGAGGCTACAGTGGAttggtttaaaaaatataaagtacCTGATGGAAAACCTGAAAACCAGTT
>TCONS_00002053
ATTCACTAACAATCAGGAACCGATGTGAGTGGATGTAAATAATGTGTTCAGTTATTATTCGTACTGCGACGAAGTTTTCTGCTGCTTTTATCCCTACACAGTCCTCTCGAAAAAGCAAGTCTTTAATTTCTGCAGCTTCCGTTCATATGAGAAAAATGGTGCATTACTTAACAGAGCAGAGAGGACGTCCAAACTCGACTGACTACAGGATTTACTTAAAAACTTCAGATGGGAAATACATATCCCCCTTCCATGACATCCCTCTGTATGTTGCTGATGAACAGGACTGTGTTGTTCCaccaaagaaaatgaaaatgaatggggTACGTTATTGTAACCATTCACCATTCATCAGGACATTATTGTAAAGCATATGGCAatgttatttttgtctttaacagatAATTTTTAATATGGTCGTGGAAGTACCTCGTTGGTCAAATGCTAAGATGGAgATAGCTACAAAGGAACCATTAAACCCAATCAGGCAAGATGTAAAGAAAGGCAAGCTACGATATGTAGCTAATGTTTTTCCACACAAAGGATACATTTGGAACTATGGTGCA

Function

symbol description
ppa2 Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to several human genes including PPA2 (inorganic pyrophosphatase 2).

GO:

id name namespace
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004427 inorganic diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1857 Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to several human genes including PPA2 (inorganic pyrophosphatase 2).

Ensembl:

ensembl_id ENSDARG00000009685

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002049 False 816 processed_transcript 0.38 6 26389153 26394460
TCONS_00002050 False 2953 mRNA 0.33 12 26390324 26398361
TCONS_00002051 False 1446 nonsense_mediated_decay 0.37 12 26391755 26398274
TCONS_00002052 False 714 processed_transcript 0.41 9 26394365 26398303
TCONS_00002053 True 566 lncRNA 0.38 4 26395116 26398289

Neighbor

gene id symbol gene type direction distance location
XLOC_001259 CU570873.1 coding downstream 38512 26350526 ~ 26350641 (-)
XLOC_001258 cxxc4 coding downstream 94158 26250729 ~ 26294995 (-)
XLOC_001257 NA coding downstream 140866 26243505 ~ 26248287 (-)
XLOC_001256 NA coding downstream 203433 26183399 ~ 26185720 (-)
XLOC_001255 cdkn2a/b coding downstream 258065 26127818 ~ 26131088 (-)
XLOC_001261 ints12 coding upstream 40236 26438597 ~ 26444075 (-)
XLOC_001262 si:ch211-202n12.2 coding upstream 140085 26538446 ~ 26544268 (-)
XLOC_001263 NA coding upstream 156519 26554880 ~ 26595059 (-)
XLOC_001264 NA coding upstream 175068 26573429 ~ 26575260 (-)
XLOC_001265 anp32b coding upstream 262008 26660369 ~ 26664840 (-)
XLOC_001247 CU929073.1 non-coding downstream 525514 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 674659 25709312 ~ 25714494 (-)
XLOC_001266 NA non-coding upstream 267397 26665758 ~ 26669757 (-)
XLOC_001271 NA non-coding upstream 620305 27018666 ~ 27024844 (-)
XLOC_001274 NA non-coding upstream 1346437 27744798 ~ 27750558 (-)

Expression


Co-expression Network