XLOC_001264


Basic Information

Item Value
gene id XLOC_001264
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26573429 ~ 26575260 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002955
CCCGGAGACCGGCCAAACGCACTTgcagaggtcagcacagctCTTCCAGATCTTATGGCTCTGTTaggaaatgatttgtcattgaagACACTGCAGCCAGACTTGTATCTGAAGGGCCCATTGCTGGGACGACGTGGATttggctctgtgtttgctggggtccgcaggtctgatggacttTCAgtggccatcaagtaCGTGTCAAAGGACCGGACCCCCGAGAGACTGAGAGTTgaCGGTCAGGGTtggctgccgctggaggtggcattgaTGACCCCCGTCACTTCAGCTCCTGTctgccccagtgtcctgcagcttCTGGACTGGTTTGACCGTGCCAGATGCTACATCTTGATCCTGGAGCGTCCGGAGCAATCCTTGCCAACatctccagagcttctgtgaggaggACGGCTGTCTGGACGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgcggcactgaaacactgcgagagccgcggacgtcaagccagagaacctgctgatctccacagagtccccggacatcaagctgctggacttcggctgtggagatctgctgaagcactcggcctacaaatactttgaAGgcactcctgcatacCCTCCTCCTGAGTGGTTTCGAAAACATCACTACAATGCCACTCCAGCTACAGTCTGGTCAGTAGTAGTGACGCTCTACAACACCCTGTGTGGCTGTTTCCCCTTCAGAGGCGCATGGAGGGTCATGTCCAGAAGCAGACTGACCTTCCTtaggagcttgtcaacagAGTGCAgtcagctgattcgctggtgtctcagtgcagcgCCGGCTGATCGGCCCAGTTTAGATGATCTTGAGCgccatccctggttgcactga
>TCONS_00002058
cttgttttattgcaggttggaggagattgtccatgtcccacatgggtgaagaaagaggagCCTCAAGCCATTCCAGACCCAGGAGAGCTGCTTTCACCCAGACAGAAGCTTTGGACACAGACACACGGGATGGCACCGCTGAGCTTCCTGGATATTTGGCTTCTCTGCCTTCACATTTGGCCGATTCTTCACCACAGATCagaggaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCGGCCAAACGCACTTgcagagACTTGTATCTGAAGGGCCCATTGCTGGGACGACGTGGATttggctctgtgtttgctggggtccgcaggtctgatggacttTCAgtggccatcaagtaCGTGTCAAAGGACCGGACCCCCGAGAGACTGAGAGTTgaCGGTCAGGGTtggctgccgctggaggtggcattgaTGACCCCCGTCACTTCAGCTCCTGTctgccccagtgtcctgcagcttCTGGACTGGTTTGACCGTGCCAGATGCTACATCTTGATCCTGGAGCGTCCGGAGCAATCCTTGCCAACatctccagagcttctgtgaggaggACGGCTGTCTGGACGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgcggcactgaaacactgcgagagccgcggacgtcaagccagagaacctgctgatctccacagagtccccggacatcaagctgctggacttcggctgtggagatctgctgaagcactcggcctacaaatactttgaAGgcactcctgcatacCCTCCTCCTGAGTGGTTTCGAAAACATCACTACAATGCCACTCCAGCTACAGTCTGGTCAGTAGTAGTGACGCTCTACAACACCCTGTGTGGCTGTTTCCCCTTCAGAGGCGCATGGAGGGTCATGTCCAGAAGCAGACTGACCTTCCTtaggagcttgtcaacagAGTGCAgtcagctgattcgctggtgtctcagtgcagcgCCGGCTGATCGGCCCAGTTTAGATGATCTTGAGCgccatccctggttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000053731

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002955 False 869 lncRNA 0.56 7 26573429 26574741
TCONS_00002058 True 1050 lncRNA 0.56 7 26573435 26575260

Neighbor

gene id symbol gene type direction distance location
XLOC_001262 si:ch211-202n12.2 coding downstream 29161 26538446 ~ 26544268 (-)
XLOC_001261 ints12 coding downstream 129354 26438597 ~ 26444075 (-)
XLOC_001260 ppa2 coding downstream 175068 26389153 ~ 26398361 (-)
XLOC_001259 CU570873.1 coding downstream 222788 26350526 ~ 26350641 (-)
XLOC_001258 cxxc4 coding downstream 278434 26250729 ~ 26294995 (-)
XLOC_001265 anp32b coding upstream 85109 26660369 ~ 26664840 (-)
XLOC_001266 NA coding upstream 90498 26665758 ~ 26669757 (-)
XLOC_001267 trmo coding upstream 95568 26670828 ~ 26676391 (-)
XLOC_001268 foxe1 coding upstream 126350 26701610 ~ 26702992 (-)
XLOC_001269 sh3gl2a coding upstream 165458 26740718 ~ 26782573 (-)
XLOC_001257 NA non-coding downstream 325142 26243505 ~ 26248287 (-)
XLOC_001256 NA non-coding downstream 387709 26183399 ~ 26185720 (-)
XLOC_001247 CU929073.1 non-coding downstream 709790 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 858935 25709312 ~ 25714494 (-)
XLOC_001271 NA non-coding upstream 443406 27018666 ~ 27024844 (-)
XLOC_001274 NA non-coding upstream 1169538 27744798 ~ 27750558 (-)
XLOC_001276 NA non-coding upstream 1733203 28308463 ~ 28316501 (-)
XLOC_001277 BX571828.1 non-coding upstream 1773698 28348958 ~ 28364598 (-)

Expression


Co-expression Network