XLOC_001267 (trmo)


Basic Information

Item Value
gene id XLOC_001267
gene name trmo
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26670828 ~ 26676391 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002062
CCAGCACATTTTTTCCAACAGCAAAACACGTGTTCTCACTGAAGTGAAAGCAGAGCAGCTGATGGAATAAACAATTCAGTTTGTTCTTGGATATATTACTAAAGCGATAGACTATAATTTTGTACAAAGGAATCCCTAAAAATGTCGTCACCAGTGTGTAGTTGTGCTGAACATGTCACAAAACTGACACAGCAAGCGTCAATAATGAGAAGAGAGATTAAAAATCTCAGACAGCAGATGGATGGATCCATACGAGCACATAGGAAGCAGATGTCAACTCTTCAGTCCATATTGACAGGCTACCGGAAACACGATGACAGATCTCAACCAAAGAACAAAAGCCCATCTCAGAACCCCAGTggaatgaatcagttattagagcaAGGGCGAATTCAGACGGTACCGATCGGATATATTAGTTCATGTTTTGCAGTGAAAAATGGAACTCCACGACAGCCTACTGTATGCAGTTCTTCACGGGCCAGATTGAAGATTGAGCCATCAGTCTTCAATAATCCTGAACATTCCTTAGTTGGACTGGAACAATACTCGCATATCTGgaTAATTTTCCTCTTCCATAAGAATGGGCAAATGAGCTGCAAAGCCAAAGTTAAGCCGCCTCGTCTGAATGGTGAAAAGGTGGGGGTGTACTCAACCCGTAGCCCCCACAGGCCCAACGCTTTGGGACTGACATTGGCTAAGCTTGAAGGAATTACAGGGGATACACTTCACTTATCAGGGGTTGATGTTATTGCTGGAACTCCCGTCCTGGACATCAAGCCATATATTCCAGACTATGATTCTCCTAAGACAAGGATAGAGGatatcagtgaatatagacaaacACCATCATACACTGACCCTCAGATGACACAATTGAGGGATCTAGATGAAGAATTAGACACCTCAGAGATGTCATCTGAACTTTCCTCAGAGGTCAGAGTTTGTCCAGGTTCTACTTCAGATTTCTCTCAGTCAGAGCAGCCTGGATCCAGCGGTGAAACTGATGTGCTAGCAGAGGTTAAAAACTATCTCAAACAACAGCATGTTTTCGCTGAATATCCAACCGAGGACAAAAACACAGATACTTCAGAAGGGACTTCAGACAATACAATGTTTTTAACTTCATCTAGTCTTAAATTTGGATGTGACGACTACAGTGCAATCGCTGCTTGGGTCAGATCACCTCCTATCAGCAAACTTGATGTGCGATTTACTGTGAATGCTGAGAAAGAGCTCAAAGAGTTTGTTCCCAGCGACAGTACTGATGGCACAAGACCAAGGTTCCAGTTCTTAAAAGGAACAGATGAAGCAGTGGCAGCCATCATTGGCATTTTGTCAGCTGACCCCAGATCAGTGTATCGTCGCACACGTTGTCAAGACCGCCTGTTTTTCTTCACCTTAGACACAGCAGACATCACCTGCTGGTTTGGAGATGGTTTTGCTGAAGTTGTTAGAGTCAAACCAGTGCAGAGCTCAGAACCCACAAACGCTGTGTGAGGTTTGTTCAATTCTTGattaaaatgagcaaaaaagTATATGATTTACTCACGCGTTTACTTACGCCATTTCAAACCTATGACTTtcatttgttaataaaaaaatgaacatacatatttacataaaattacatgcatacaatttcc
>TCONS_00002063
CCCAGTggaatgaatcagttattagagcaAGGTAGCGTTAAAAGAAATGCCTTCACTTTTGATGCATGCAGCAGTGACTCCAAATGAATTCTATGTAGGCTAAATGTACACTGAACCTGTTGGCGAATTCAGACGGTACCGATCGGATATATTAGTTCATGTTTTGCAGTGAAAAATGGAACTCCACGACAGCCTACTGTATGCAGTTCTTCACGGGCCAGATTGAAGATTGAGCCATCAGTCTTCAATAATCCTGAACATTCCTTAGTTGGACTGGAACAATACTCGCATATCTGgaTAATTTTCCTCTTCCATAAGAATGGGCAAATGAGCTGCAAAGCCAAAGTTAAGCCGCCTCGTCTGAATGGTGAAAAGGTGGGGGTGTACTCAACCCGTAGCCCCCACAGGCCCAACGCTTTGGGACTGACATTGGCTAAGCTTGAAGGAATTACAGGGGATACACTTCACTTATCAGGGGTTGATGTTATTGCTGGAACTCCCGTCCTGGACATCAAGCCATATATTCCAGACTATGATTCTCCTAAGACAAGGATAGAGGatatcagtgaatatagacaaacACCATCATACACTGACCCTCAGATGACACAATTGAGGGATCTAGATGAAGAATTAGACACCTCAGAGATGTCATCTGAACTTTCCTCAGAGGTCAGAGTTTGTCCAGGTTCTACTTCAGATTTCTCTCAGTCAGAGCAGCCTGGATCCAGCGGTGAAACTGATGTGCTAGCAGAGGTTAAAAACTATCTCAAACAACAGCATGTTTTCGCTGAATATCCAACCGAGGACAAAAACACAGATACTTCAGAAGGGACTTCAGACAATACAATGTTTTTAACTTCATCTAGTCTTAAATTTGGATGTGACGACTACAGTGCAATCGCTGCTTGGGTCAGATCACCTCCTATCAGCAAACTTGATGTGCGATTTACTGTGAATGCTGAGAAAGAGCTCAAAGAGTTTGTTCCCAGCGACAGTACTGATGGCACAAGACCAAGGTTCCAGTTCTTAAAAGGAACAGATGAAGCAGTGGCAGCCATCATTGGCATTTTGTCAGCTGACCCCAGATCAGTGTATCGTCGCACACGTTGTCAAGACCGCCTGTTTTTCTTCACCTTAGACACAGCAGACATCACCTGCTGGTTTGGAGATGGTTTTGCTGAAGTTGTTAGAGTCAAACCAGTGCAGAGCTCAGAACCCACAAACGCTGTGTGAGGTTTGTTCAATTCTTGattaaaatgagcaaaaaagTATATGATTTACTCACGCGTTTACTTACGCCATTTCAAACCTATGACTTtcatttgttaataaaaaaatgaacatacatatttacataaaa

Function

symbol description
trmo Predicted to enable tRNA (adenine-N6-)-methyltransferase activity. Orthologous to human TRMO (tRNA methyltransferase O).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0016426 tRNA (adenine) methyltransferase activity molecular_function
GO:0016430 tRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-051023-15 Predicted to enable tRNA (adenine-N6-)-methyltransferase activity. Orthologous to human TRMO (tRNA methyltransferase O).

Ensembl:

ensembl_id ENSDARG00000037245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002062 False 1646 mRNA 0.42 6 26670828 26676391
TCONS_00002063 True 1363 mRNA 0.43 5 26670847 26675969

Neighbor

gene id symbol gene type direction distance location
XLOC_001266 NA coding downstream 1071 26665758 ~ 26669757 (-)
XLOC_001265 anp32b coding downstream 5988 26660369 ~ 26664840 (-)
XLOC_001263 NA coding downstream 75769 26554880 ~ 26595059 (-)
XLOC_001264 NA coding downstream 95568 26573429 ~ 26575260 (-)
XLOC_001262 si:ch211-202n12.2 coding downstream 126560 26538446 ~ 26544268 (-)
XLOC_001268 foxe1 coding upstream 25219 26701610 ~ 26702992 (-)
XLOC_001269 sh3gl2a coding upstream 64327 26740718 ~ 26782573 (-)
XLOC_001270 cntln coding upstream 145572 26821963 ~ 27014935 (-)
XLOC_001271 NA coding upstream 342275 27018666 ~ 27024844 (-)
XLOC_001272 si:ch211-127n13.2 coding upstream 854434 27530825 ~ 27542119 (-)
XLOC_001259 CU570873.1 non-coding downstream 320187 26350526 ~ 26350641 (-)
XLOC_001257 NA non-coding downstream 422541 26243505 ~ 26248287 (-)
XLOC_001274 NA non-coding upstream 1068407 27744798 ~ 27750558 (-)
XLOC_001276 NA non-coding upstream 1632072 28308463 ~ 28316501 (-)
XLOC_001277 BX571828.1 non-coding upstream 1672567 28348958 ~ 28364598 (-)
XLOC_001281 NA non-coding upstream 2031788 28708179 ~ 28709951 (-)

Expression


Co-expression Network